Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01065 ATGGAGGCCATTGGTTCTGTGGATGACCTCTTGGATTTTTCCTTGGACATAGGTGAGGAAGATGATGACGAAGACAAACCTAGGAAATCCTGTCCTTCATTTAACTCAAAATGTAGCGACCCATCATTGTTTAACCCATTGCCGGATGATCCGAACCATTCATATTCTGAGTTTGTAGAAGAGGAGCTTGAATGGCTATCCAACAAAGATGCATTTCCTTCTGTTGAAACATTTGTTGACCTATCATGTATTCAACCTGACGCAGCTAAGATCCAGAAAACACCCCCAGTAACCACCCCATTACTCGAGTACAGCACAGGCAGTAGCAACAGTAATAACAGCAGTAACAGTATTTCCCTCCTAAACAGCTGTGATCACCTTAAGGTCCCAGTCCGTGCACGTAGCAAGAGACACAGTAGGCGTCGCCCTGGCATTGCTGACGAAAACTCTAGTCAGCAAGTCTGGTGGAGACAACCTAGTAATGAAACTTCCAAGGCAGAAGAAGGGATGAAAATGTCATCCATTGGGAGGAAATGTCAGCATTGTGGAGCTGAGAAAACTCCACAGTGGCGGGCAGGTCCTCTTGGGCCAAAAACACTTTGTAATGCATGTGGGGTTAGGTTTAAGTCTGGTCGACTTGTGCCTGAATACCGTCCTGCTAGTAGCCCAACTTTTCGTAGTGATTTGCATTCTAATTCCCACAGGAAGATAATAGAGATGAGGAGGCAGAAGCAAACGGGAATGGGATAA 750 0.456 MEAIGSVDDLLDFSLDIGEEDDDEDKPRKSCPSFNSKCSDPSLFNPLPDDPNHSYSEFVEEELEWLSNKDAFPSVETFVDLSCIQPDAAKIQKTPPVTTPLLEYSTGSSNSNNSSNSISLLNSCDHLKVPVRARSKRHSRRRPGIADENSSQQVWWRQPSNETSKAEEGMKMSSIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFRSDLHSNSHRKIIEMRRQKQTGMG* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01065 249 ProSiteProfiles GATA-type zinc finger domain profile. 173 209 IPR000679 GO:0006355|GO:0043565
Lapu7g01065 249 ProSitePatterns GATA-type zinc finger domain. 179 204 IPR000679 GO:0006355|GO:0043565
Lapu7g01065 249 CDD ZnF_GATA 178 226 IPR000679 GO:0006355|GO:0043565
Lapu7g01065 249 Pfam GATA zinc finger 179 212 IPR000679 GO:0006355|GO:0043565
Lapu7g01065 249 MobiDBLite consensus disorder prediction 146 168 - -
Lapu7g01065 249 SMART GATA_3 173 223 IPR000679 GO:0006355|GO:0043565
Lapu7g01065 249 MobiDBLite consensus disorder prediction 15 55 - -
Lapu7g01065 249 Gene3D - 174 247 IPR013088 GO:0006355|GO:0008270
Lapu7g01065 249 FunFam GATA transcription factor 168 248 - -
Lapu7g01065 249 PANTHER GATA TRANSCRIPTION FACTOR 7 245 - -
Lapu7g01065 249 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 175 236 - -
Lapu7g01065 249 MobiDBLite consensus disorder prediction 132 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01065 Lapu-Chr7 20585208 20589833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01065 60 249 C2C2-Gata Transcription Factor Family AT3G24050 45.872 3.21e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu7g01065 GATA 8.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01065 - - gmx:100784527 405.986