Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00983 ATGGGAAGAGCTCCTTGTTGTGACAAGGCCAATGTAAAGAAAGGACCATGGAGTCCAGAGGAAGATGAAAAGCTAAGAGAGTTCATAGAGAAACATGGTACCGGAGGAAACTGGATTTCCCTCCCACATAAAGCTGGTTTGAAAAGATGTGGAAAAAGTTGTAGACTCAGATGGCTAAATTATCTGAGGCCAAACCTTAAGCATGGGGAGTTTTCTGAAGATGAAGATAGAATAATCTGCACTCTCTTTGCTAGCATTGGAAGCAGGTGGTCCATAATAGCATCTCAGTTGCCAGGCAGGACTGACAACGATATCAAGAACTACTGGAACACCAAGCTTAAGAAAAAAATGATGGGAATAATGAACCCTTCAGCACTGAAGAAGCCTCACCAAGTCACCCTTTCATCCATGCTTCAAAACTCAACACCCTCTTCATCCTCCTCCTCGTCTTCATTATCATTGAAAAACAATCACAACTCCAATTATCAACCCCATGTGCCTTTCACAGGCTCTGAGGCCATTTCATACTCAAGTCTTCTGAGTGGCAATTCTTCTTCTACTCCAGCTTATTCCACTCTTGAGAGCCTTTACCAAGTTAATAGTGGTTTCATGTTAGGGGGTGAAACTAGTTGCAGCTCTTCTTCAGATGGAAGCTGCAACAACAATCAGATGAATCATGTGAAAGGAGCAGAAGTTGGATATGTTGGTGTAGGAGGTTTTGGTGACCAAATGGGGGGTCTTAGCTACCTCTCTAGTGGGGTGGAAGATACCCAAAAGTTGGTGTCCTCCAATGCTGGTAGGGATAGTGGGTGGACAGGTGAAGAAAGTAGATTATGGGGAGAAAGTCCATTGGAGTATGGTGTAGAAGAAATTAAACAGCTAATAAGCACAAGTAGTTGCAACAACTTTATGTTTGATGACAGCAAGACAGGGGAAATGGTGATGTACTACTGA 954 0.4308 MGRAPCCDKANVKKGPWSPEEDEKLREFIEKHGTGGNWISLPHKAGLKRCGKSCRLRWLNYLRPNLKHGEFSEDEDRIICTLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMGIMNPSALKKPHQVTLSSMLQNSTPSSSSSSSSLSLKNNHNSNYQPHVPFTGSEAISYSSLLSGNSSSTPAYSTLESLYQVNSGFMLGGETSCSSSSDGSCNNNQMNHVKGAEVGYVGVGGFGDQMGGLSYLSSGVEDTQKLVSSNAGRDSGWTGEESRLWGESPLEYGVEEIKQLISTSSCNNFMFDDSKTGEMVMYY* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00983 317 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lapu7g00983 317 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lapu7g00983 317 Gene3D - 69 142 - -
Lapu7g00983 317 SMART sant 13 64 IPR001005 -
Lapu7g00983 317 SMART sant 67 115 IPR001005 -
Lapu7g00983 317 MobiDBLite consensus disorder prediction 131 166 - -
Lapu7g00983 317 FunFam Transcription factor RAX3 7 68 - -
Lapu7g00983 317 PANTHER OS09G0431300 PROTEIN 1 289 - -
Lapu7g00983 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Lapu7g00983 317 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lapu7g00983 317 CDD SANT 16 62 IPR001005 -
Lapu7g00983 317 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lapu7g00983 317 Gene3D - 7 68 - -
Lapu7g00983 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Lapu7g00983 317 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lapu7g00983 317 CDD SANT 70 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00983 Lapu-Chr7 16148563 16150065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00983 1 119 MYB Transcription Factor Family AT5G57620 84.034 7.41e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu7g00983 Myb_DNA-binding 7.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00983 K09422 - gmx:100820139 467.233