Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00946 ATGATTACATTCATGGACTCAAAGGAGAAATCGAAGGAGGTGGAGAGGTGTTTGGATCCTCAACTGTGGCATGCGTGTGCAGGTGGTATGGTGCAGATGCCAGCAGTGAACACCAAGGTGTATTACTTCCCTCAGGGCCATGCTGAACATGCATGTGGACCGGTTAACTTCAGGACCTGTCCCAAGGTTCCACCTTTGGTTCCATGCAGAGTGGCTGGCATCAAATACATGGCTGATCCTGAGACTGATGAGGTGTATGCCAAACTCAGGCTTGCTCCTTTGAGCGTCAATGATGCTGATTATGACCGTGATGTTGTTGGACCTGAAACTCAGGACAAGCCTGCTTCATTTGCAAAAACCTTGACCCAATCTGATGCCAACAATGGTGGTGGGTTTTCTGTTCCAAGGTACTGTGCTGAGACAATTTTCCCAAGATTGGATTACTCGGCTGATCCTCCTGTTCAGAACATCCTTGCCAAGGATGTTCATGGGGAAACATGGAAATTTAGACACATCTACAGGGGCACGCCGAGGCGGCATCTATTGACCACTGGATGGAGTACTTTTGTGAATCACAAGAAGCTTGTTGCAGGAGACTCAATTGTGTTTTTGAGGGCAGAAAACGGAGATCTGTGTGTTGGGATTCGGCGAGCGAAGAAGGGGATTGGTGGGGGACCTGAGGCCTCCTCTGGCTGGAACCCTGCTGGAGGAAGTTGTCCTATGCCCTATGGTGGATTTTCACCTTTTTTGAGGGAGGATGACAACAGAATCCTGAGGAATGGTAATAGCAATGGGTTGAACCCAAGTGTGAGTATGATGGGCAGGGGCAAAGTGAGACCAGAAGCTGTTGTTGAAGCTGCAAATCTAGCGGCCAATAAGCAACCATTTGAGGTTGTTTACTACCCTCGGGCAAGTACTCCGGAATTTTGTGTGAAGGCCCCACTAGTAGAAGCAGCACTGCAGATAAGGTGGTGTTCTGGAATAAGGTTCAAGATGGCCTTTGAAACTGAGGACTCCTCACGGATAAGTTGGTTTATGGGAACGATATCTTCGGTTCAGGTTGCCGATCCCCTTAACTGGCCTAACTCACCCTGGAGGCTTCTCCAGGTGACATGGGATGAACCAGATTTACTTCAAAATGTGAGAAGGGTGAGCCCTTGGCTGGTTGAATTGGTGTCGAACATGCCTGCCATTCATCTTTCCCCATTCTCGCCACCGAGGAAGAAATTGAGATTGCCTCAACACCCAGATTTCCCCCTTGATGGGCAGATTCCTTTGCCAGCATTTTCCGGCAACCTTCTCGGTCCCAGCAACATCAACCAGTTTGGTTGTCTACCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCACTATGGTCTATCCATATCGGATCTCCACTTCAGTAAACTGCATTCAGGTCTATTTCCGGCTGGTTTCCCACCTCTTGATCACGCTGCTACGCCAATGAGAATCTCCAATAACCAAGCATTGCCAAAGCCCAGCATGAGTGAGAATGTCTCTTGCTTACTATCTATGGCAAATTCTACTCAATCTACAAAGAAAATGGATGAGGGGAAGACACCACAGCTGGTGCTTTTCGGCCAAAAAATTCTCACGGAGCAGCAGATCTCTCTCAGCAGCTCCGGTGATACACTCTCCCCAGTTCTTACCAGAAATTGTTCGTCCGATGGACATGCCGATAAAGTGGCTAATTTTTCTGATGGTTCTGGATCGGCTCTTCATCAGCAGCAAGGCCAACACGAACGTTCCTCTTGTGAGAGGTTTCCGTGGTATAGAGATAACCCCCAAGAAACTGAGGCCGGTCTGGAGACTGGTCATTGTAAAGTTTTCATGGAGTCAGAAGATGTAGGCAGGACTATGGACCTCTCATTGCTTCGGTCTTATGATGAACTCTACAGAAGGCTGACAGACATGTTTGGCATAGAAAAATCTGAGATGTTAAGTCAGGTGCTCTATCGCGATTCAAATGGAGCTGTCAAACACATTGGTGATGAACCATTCAGTGACTTCATAAGAACAGCCAGAAGATTGACTATTCTAATGGATTCTGGCAGCAACAATTTAGGAGTGTAG 2103 0.4803 MITFMDSKEKSKEVERCLDPQLWHACAGGMVQMPAVNTKVYYFPQGHAEHACGPVNFRTCPKVPPLVPCRVAGIKYMADPETDEVYAKLRLAPLSVNDADYDRDVVGPETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGPEASSGWNPAGGSCPMPYGGFSPFLREDDNRILRNGNSNGLNPSVSMMGRGKVRPEAVVEAANLAANKQPFEVVYYPRASTPEFCVKAPLVEAALQIRWCSGIRFKMAFETEDSSRISWFMGTISSVQVADPLNWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVSNMPAIHLSPFSPPRKKLRLPQHPDFPLDGQIPLPAFSGNLLGPSNINQFGCLPESTPAGMQGARHAHYGLSISDLHFSKLHSGLFPAGFPPLDHAATPMRISNNQALPKPSMSENVSCLLSMANSTQSTKKMDEGKTPQLVLFGQKILTEQQISLSSSGDTLSPVLTRNCSSDGHADKVANFSDGSGSALHQQQGQHERSSCERFPWYRDNPQETEAGLETGHCKVFMESEDVGRTMDLSLLRSYDELYRRLTDMFGIEKSEMLSQVLYRDSNGAVKHIGDEPFSDFIRTARRLTILMDSGSNNLGV* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00946 700 MobiDBLite consensus disorder prediction 578 593 - -
Lapu7g00946 700 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Lapu7g00946 700 FunFam Auxin response factor 324 397 - -
Lapu7g00946 700 Gene3D - 115 219 IPR015300 -
Lapu7g00946 700 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Lapu7g00946 700 Pfam Auxin response factor 286 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu7g00946 700 CDD B3_DNA 116 217 IPR003340 GO:0003677
Lapu7g00946 700 Gene3D - 612 698 - -
Lapu7g00946 700 ProSiteProfiles PB1 domain profile. 614 694 IPR000270 GO:0005515
Lapu7g00946 700 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 692 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu7g00946 700 Gene3D - 323 397 - -
Lapu7g00946 700 SMART B3_2 117 219 IPR003340 GO:0003677
Lapu7g00946 700 SUPERFAMILY DNA-binding pseudobarrel domain 110 218 IPR015300 -
Lapu7g00946 700 MobiDBLite consensus disorder prediction 570 594 - -
Lapu7g00946 700 FunFam Auxin response factor 115 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00946 Lapu-Chr7 12315717 12319783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00946 14 700 B3 DNA Binding Superfamily AT4G30080 58.512 0.0 752
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu7g00946 B3 3.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00946 - - gmx:100796522 1258.82