Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00936 ATGGCTAGGAAGAAATTGAAACTTGCCTTTATCTCTGATGACATGACAAGGAAAATCACATACAAGAGAAGGAATAAGGGTCTGATTAAGAAGGTGGATGAACTGGCCACTCTCTGCGGGATCTCAGCTTGTGCTATAATTTCTAATCCTTTTGATTCTGAGATAGAAGTTTGGCCAAATCCAGAAGGAGTCAACAAGGTGATCGAGAGGTTTAGGAATGCACCTATACTAAACAAAAGCAGGAACGTGAACTACGAAAGCTACATGATGCAAAGGATCGTCAAAGCCCAAAATGAATTGAAGATGCAACGTGAAGAGAACTATGAGAAAGAAATGACCTTGTCCATGTTTCAGTTCATGCAAGGTCAAAACCTGCCAAATACCCTTGAAGAAATCAATGAAATGGACAAGCTGATTCAGAAGAATATAAAAGAGATTGAGAACAAGTTGGCTGCACTCAACT 463 0.3974 MARKKLKLAFISDDMTRKITYKRRNKGLIKKVDELATLCGISACAIISNPFDSEIEVWPNPEGVNKVIERFRNAPILNKSRNVNYESYMMQRIVKAQNELKMQREENYEKEMTLSMFQFMQGQNLPNTLEEINEMDKLIQKNIKEIENKLAALN 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00936 154 Coils Coil 129 149 - -
Lapu7g00936 154 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu7g00936 154 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu7g00936 154 Gene3D - 13 118 IPR036879 GO:0003677|GO:0046983
Lapu7g00936 154 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Lapu7g00936 154 PANTHER MADS BOX PROTEIN 3 150 - -
Lapu7g00936 154 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Lapu7g00936 154 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Lapu7g00936 154 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lapu7g00936 154 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00936 Lapu-Chr7 11754222 11754684 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00936 1 153 Type I MADS-box Gene Family AT5G48670 42.949 1.05e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu7g00936 SRF-TF 7.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00936 - - var:108324686 226.483