Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00935 ATGACAAGGAAAACCACATACAAGAGAAGGAATAAGGGTCTGATTAAGAAGGTGGATGAACTGGCCACTCTCTGCGGGATCTCAGCTTGTGCTATAATTTCTAATCCTTTTGATTCTGAGATAGAAGTTTGGCCAAATCCAGAAGGAGTCAACAAGGTGATCGAGAGGTTTAGGAATGCACCTATACTAAACAAAAGCAGGAACGTGAACTACGAAAGCTTCATGATGCAAAGGATCGTCAAAGCCCAAAATGAATTGAAGATGCAACGTGAAGAGAACTATGAGAAAGAAATGACCTTGTCCATGTTTCAGTTCATGCAAGGTCAAAACCTGCCAAATACCCTTGAAGAAATCAATGAAATGGACAAGCTGATTCAGAAGAATATAAAAGAGATTGAGAACAAGTTGGCTGCACTCAACTGTGAGTCT 429 0.4033 MTRKTTYKRRNKGLIKKVDELATLCGISACAIISNPFDSEIEVWPNPEGVNKVIERFRNAPILNKSRNVNYESFMMQRIVKAQNELKMQREENYEKEMTLSMFQFMQGQNLPNTLEEINEMDKLIQKNIKEIENKLAALNCES 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00935 143 PANTHER MADS BOX PROTEIN 3 136 - -
Lapu7g00935 143 CDD MADS_SRF_like 2 70 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lapu7g00935 143 SMART madsneu2 2 46 IPR002100 GO:0003677|GO:0046983
Lapu7g00935 143 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 36 IPR002100 GO:0003677|GO:0046983
Lapu7g00935 143 ProSiteProfiles MADS-box domain profile. 1 33 IPR002100 GO:0003677|GO:0046983
Lapu7g00935 143 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Lapu7g00935 143 Gene3D - 1 103 IPR036879 GO:0003677|GO:0046983
Lapu7g00935 143 Coils Coil 115 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00935 Lapu-Chr7 11742104 11742572 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00935 2 139 Type I MADS-box Gene Family AT5G48670 41.135 7.22e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu7g00935 SRF-TF 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00935 - - var:108324686 205.682