Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00934 ATGGCACCTTCTGGATTGCATATGGTGGCTGAAAGTTACTCTTCTAGACATCCAAGACCGTTGACCACGGTTGGCTGGCACAGCAATGATAGAAATGGAAGGTCAAGAATACATAGTGATAGATATCGAGCATTGGCTGATGAGGTTGGTCTCAATGATCAATTTAACTTTGAGGGTTTCATGATTGTTGATCGCACTTCACTGTATGGTAGGAATATGCTTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTACTTGCACTCGGAGAGAGAATAGGCCATGTGAGCGCAGGATTATCTGAGGATTTGATTTCCAAGTATTTGACAGAAACTATATACTGTTCATCCGAGCCAAGTCAAGAAGACGAAGCTTGTGCAATCTGCCTGGAAGAATACAAGAACGTGGACGATGTTGGAACGCTGAAAGCTTGTGGGCATGATTACCATGTGAGTTGCATTAGAAAGTGGTTGTCTATGAAGAAAGTATGTCCTATCTGCAAAGCTTCTGCTTTGCCTGAGGAAACGAAGGATAAATAA 558 0.4247 MAPSGLHMVAESYSSRHPRPLTTVGWHSNDRNGRSRIHSDRYRALADEVGLNDQFNFEGFMIVDRTSLYGRNMLDQHRDMRMDIDNMSYEELLALGERIGHVSAGLSEDLISKYLTETIYCSSEPSQEDEACAICLEEYKNVDDVGTLKACGHDYHVSCIRKWLSMKKVCPICKASALPEETKDK* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00934 185 CDD RING-H2_RNF24-like 130 177 - -
Lapu7g00934 185 Pfam Ring finger domain 131 174 IPR001841 -
Lapu7g00934 185 SUPERFAMILY RING/U-box 122 178 - -
Lapu7g00934 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 178 IPR013083 -
Lapu7g00934 185 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Lapu7g00934 185 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 5 178 IPR045191 GO:0061630
Lapu7g00934 185 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 97 178 - -
Lapu7g00934 185 SMART ring_2 132 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00934 Lapu-Chr7 11687965 11689177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00934 7 184 C3H Transcription Factor Family AT2G37150 55.556 1.29e-59 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00934 - - gmx:100786013 334.724