Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00931 ATGGCTAGGAAGAAATTGAAACTTGCCTTTATCTCTGATGACATGACAAGAAAAATCACATACAAGAGAAGGAAGAAGGATCTGATTAAGAAGGTGGATGAACTGGCCACTCTCTGCGGGATCTCAGCTTGTGCTATAATTTCTAATCCGATAGAAGTTTGGCCAAATCCAGAAGGAGTCAACAAGGTGATCGAGAGGTTTAGGAATGCACCTATACTAAACAAAAGCAGGAACGTGAACTACGAAAGCTTCATGATGCAAAGGATCGTCAAAGCCCAAAATGAATTGAAGATGCAACGTGAAGAGAACTATGAGAAAGAGATGACCTTGTCCATGTTTCAGTTCATGCAAGGTCAAAACCTGCAAAATACCCTTGAAGAAATCAATGAAATGGACAAGCTGATTAAGAAGAATATAAAAGAGATTGAGAACAAGTTGGCTGCACTCAACTGTGAGTCT 459 0.3987 MARKKLKLAFISDDMTRKITYKRRKKDLIKKVDELATLCGISACAIISNPIEVWPNPEGVNKVIERFRNAPILNKSRNVNYESFMMQRIVKAQNELKMQREENYEKEMTLSMFQFMQGQNLQNTLEEINEMDKLIKKNIKEIENKLAALNCES 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00931 153 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Lapu7g00931 153 Coils Coil 121 152 - -
Lapu7g00931 153 Gene3D - 13 145 IPR036879 GO:0003677|GO:0046983
Lapu7g00931 153 SMART madsneu2 1 56 IPR002100 GO:0003677|GO:0046983
Lapu7g00931 153 CDD MADS_SRF_like 2 80 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lapu7g00931 153 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Lapu7g00931 153 PANTHER MADS BOX PROTEIN 3 146 - -
Lapu7g00931 153 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00931 Lapu-Chr7 11596286 11596744 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00931 1 149 Type I MADS-box Gene Family AT5G48670 42.949 5.22e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu7g00931 SRF-TF 2.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00931 - - var:108324686 208.379