Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00912 ATGCAAATGATGCCCGGTGACCCCTTTTCTCTATCCACTTCCATCGGAGGCTTCACTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAACCCTCCTCCAAAGAAGAAGAGAAATCTTCCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTCTCACCGAAGACCCTCATGGCCACCAACCGATTCATATGCGAAATATGTAACAAAGGGTTCCAGAGAGACCAAAACCTTCAGCTTCACCGAAGGGGTCATAACCTTCCATGGAAGCTACGACAAAGATCCAACAAAGAGGTAAGGAAGAAGGTTTATATCTGTCCCGAACAATCCTGCGTGCACCACGACCCTGCAAGAGCACTAGGGGACCTCACTGGCATCAAAAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAGCCCACACCAAAACCTGTGGCACTAGAGAATACAAATGCGACTGTGGCACCCTTTTCTCCAGGAAGGACAGCTTCATTACCCATAGAGCATTTTGCGATGCCTTGGCTGAAGAGAGTGCGAGACTCACCTCAGTTACCTCAACAAGTCTAAATTTCAAGAGTGAAGAGGGTGGTAATGTGATGAACTCGCAGCCTGGTTTGGGAGGGCATGGACTAATTGCTGCACAAAGTCTTCAAAATGTTTCTGGCATTCCACAATTTGGTCCACATAGTTTTCGTTTGGATTTTAATGGAATGGAACAACCAAGGCCAAGCTTGTCACTGTGGTTGAACCAGGGGAATCCCCAGATGAATAATAATAGTAATGTTAACAGCAACAATAATGGTCCCGATGTGGGGCCCAATTACATGTCGTCATGCTCTTCTTCAGGTTTGCCTGATATTGTGCAATTGGCTCAGGCTAATGCTTTGATGGGTTCTACATCGATGGTGTCTAATTTTGGAGTTCCTGCGGGTTCTAATTCTACCAGTGCAAATCTTTCTCTGTCGTCACTTCCTATTGGGAAAAGAGGGGAAGCAGGTGGAACTGTAGTGGACTTAGCGTCTATTTATAACTCTGAGGGTCAAAACAAGAATTCAAAGCCTGCTTCACCCATGTCAGCCACTGCGCTTCTTCAGAAAGCAGCGCAGATGGGTTCCACCAGAAGCACCAACCCTTCCATTTTCAGTGGTAGTTTTGGAGTGATGAACTCACCTTCCTCACAAACTACCAGTCTCAATAATAACAACAACGGCGGTGCAGCCATGATGCTGGGAAGTAATACTGCTGCTGCAACTGATTTTACCTCGTTGACGCATTCATCAAACAGTTTTGACCAACTTGTGATGCAAACCAATGCGCAGTTGCAAAGTGAGCCTGTGAAGTTGAAGCTTCGTTCGAGCGCCGTCGAGCACAATTTAACAAGGGATTTCCTTGGAGTCAGTGGAGGAGGAGGTGGCGGTGGACCTCAGTTCCTGCCGCAAGAACTTGCAAAGTTTGCTTCCTTAGGCTCGCCTATGGGGTTGAGCCATTTCACAAGTAACCAATGA 1557 0.4695 MQMMPGDPFSLSTSIGGFTQEQNTNPNPKPNPPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEQSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTSTSLNFKSEEGGNVMNSQPGLGGHGLIAAQSLQNVSGIPQFGPHSFRLDFNGMEQPRPSLSLWLNQGNPQMNNNSNVNSNNNGPDVGPNYMSSCSSSGLPDIVQLAQANALMGSTSMVSNFGVPAGSNSTSANLSLSSLPIGKRGEAGGTVVDLASIYNSEGQNKNSKPASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMNSPSSQTTSLNNNNNGGAAMMLGSNTAAATDFTSLTHSSNSFDQLVMQTNAQLQSEPVKLKLRSSAVEHNLTRDFLGVSGGGGGGGPQFLPQELAKFASLGSPMGLSHFTSNQ* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00912 518 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Lapu7g00912 518 FunFam protein indeterminate-domain 12-like 43 111 - -
Lapu7g00912 518 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Lapu7g00912 518 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Lapu7g00912 518 Gene3D Classic Zinc Finger 42 116 - -
Lapu7g00912 518 SMART c2h2final6 64 86 IPR013087 -
Lapu7g00912 518 SMART c2h2final6 140 160 IPR013087 -
Lapu7g00912 518 SMART c2h2final6 105 135 IPR013087 -
Lapu7g00912 518 MobiDBLite consensus disorder prediction 1 48 - -
Lapu7g00912 518 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Lapu7g00912 518 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Lapu7g00912 518 Gene3D Classic Zinc Finger 119 197 - -
Lapu7g00912 518 MobiDBLite consensus disorder prediction 1 25 - -
Lapu7g00912 518 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 492 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00912 Lapu-Chr7 11078621 11082511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00912 1 229 IDZ Gene Family AT5G03150 68.235 3.03e-120 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu7g00912 zf-C2H2_jaz 7.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00912 K25870 - gmx:100801182 792.727