Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00887 ATGGCGGCCACGGCGGCGGCAGCAGCAGCAGCGAGTGATGGGTCGGGGAAGAAGGTTAGAAAGCCTTACACCATAACCAAGTCAAGGGAGAGTTGGACTGAGGAAGAGCACGACAAGTTTCTCGAAGCTCTTCAACTATTTGACAGGGATTGGAAAAAAATTGAAGATTTCGTAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCTCAGAAATACTTCTTGAAAGTTCAAAAGAATGGGACTGTGGCACATGTGCCTCCTCCCCGTCCCAAGCGAAAAGCTACTCATCCTTACCCACAAAAAGCATCTAAAAATGTTTTGGTGCCACTACCAGCTTCCATTGGCTATGCTTCTTCAACAAATATGCTTGCACCTGGGTTTGCCACATGGGATGAAACCTCCTTGCTGATGAATGCAGGAGCCAGTAAATCCATGACCTGTCAGGATGAACCCAATAATCTTCGAGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACAGATTACCAACAGCAGTCTTAGTGGTGTTAAAAATTCTACTAGAACGCTACCGACTTCTGAGATAACAAAGCAAGGGAAACAAACTCCGATTCTTCATGGTTTGCCAGATTTTGCTGAAGTTTACAGTTTCATTGGAAGTGTATTTGATCCAGATACAAATGACCATGTCCAAAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTATTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTTGAACCCATCAAGAAGGTATTGTCAACATATGATGTGAATGGCATGGCAGTAGGAGTTGGTGCAGGAATTGATGTCAAGAAGCAGACAAATGATCTATCATGTCAAACTGCTTAA 879 0.4266 MAATAAAAAAASDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKATHPYPQKASKNVLVPLPASIGYASSTNMLAPGFATWDETSLLMNAGASKSMTCQDEPNNLRGNEADIGSKGITQITNSSLSGVKNSTRTLPTSEITKQGKQTPILHGLPDFAEVYSFIGSVFDPDTNDHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPIKKVLSTYDVNGMAVGVGAGIDVKKQTNDLSCQTA* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00887 292 CDD SANT 31 74 IPR001005 -
Lapu7g00887 292 NCBIfam myb-like DNA-binding domain, SHAQKYF class 27 76 IPR006447 GO:0003677
Lapu7g00887 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 78 IPR017930 -
Lapu7g00887 292 FunFam protein REVEILLE 6 isoform X1 31 79 - -
Lapu7g00887 292 Pfam Myb-like DNA-binding domain 29 74 IPR001005 -
Lapu7g00887 292 Gene3D - 32 79 - -
Lapu7g00887 292 PANTHER SWI/SNF COMPLEX-RELATED 15 251 - -
Lapu7g00887 292 SUPERFAMILY Homeodomain-like 23 79 IPR009057 -
Lapu7g00887 292 ProSiteProfiles SANT domain profile. 27 80 IPR017884 -
Lapu7g00887 292 ProSiteProfiles Myb-like domain profile. 24 74 IPR001005 -
Lapu7g00887 292 SMART sant 28 76 IPR001005 -
Lapu7g00887 292 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00887 Lapu-Chr7 10707641 10715027 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu7g00887 Myb_DNA-binding 4.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00887 - - vra:106754423 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00887 7 10707641 10715027 Lapu7g00887 7 10707641 10715027 ECH