Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00886 ATGCCGCCAAAGCAGCAATCCAAAGCTGATTTAGCGAAGAAGCAGAAGATTGTAGAGGACAAAACCTTCGGTCTCAAGAACAAAAACAAGAGCAAAAATGTTCAGAAGTATGTCCAGAACCTTAAGCAATCAGTGCAGCCCCGGGTCGATCCCGCCAAAGTCGATGCCAAGAAAAAGAAGGAGGAAGAGAAGGCCAAGGAGAAGGAGCTAAATGATTTGTTCAAAATCGCTGTTACTCAACCTAAAGTGCCAGTTGGTGTTGATCCCAAGTCTATATTGTGTGAGTTTTATAAAGTGGGGCAGTGTGCGAAGGGCTTCAAGTGCAAGTTTTCGCATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGTGATAAGCGTGACCAGGAAACAATGGAGGACTGGGATCAAGAGACCTTGGAGAAGGTGGTGGAGTCGAAGAAAACTGACTATAATCATAATAAACCAACTGACATAGTATGCAAACACTTTTTGGATGCGGTAGAAAAGAAGCAATACGGTTGGTTTTGGGTCTGCCCCAATGGTGGTAAGAATTGCCATTATAGACATGCTCTTCCTCCTGGTTATGTTTTGAAATCCCAAATGAAGGCTTTGTTGGAGGAAGAAGCTGACAAATTATCAATCGAGGAGGAGATTGAAAATCAGCGTGCCAAAGTGAAAACTACGACTCCTATGACTCCTGACCTATTCTATGAATGGAAGAAGAAGAAGATAGAAGAAAGAGATGCCAATTTAGCCGCACAGCAGGCAGAGAGGGCTAAGAATGACCGTATGAGTGGTCGGGAGCTATTTTTGTCAAATGCTAGCTTGTTTGTGGATGATGCAGAAGCATATGAAAAATACCAGAGAGAACCAGAATATGATGAAACTGAACAGAATGGTAATGTGAACACTGCCCAAGATGGTCCCAGCACCTCAGCTGGTGCTGATGGTGAAGCTCTTGATGACATTGACGATGATGAAGACGAGTTGGACATGGACGAGTTAAATGAATTGGAAGCAAGCTTAGCCAAGACATCAATCCAAATAAAGGAAACGGGAGCTGAAGCTTAA 1083 0.4312 MPPKQQSKADLAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQSVQPRVDPAKVDAKKKKEEEKAKEKELNDLFKIAVTQPKVPVGVDPKSILCEFYKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDQETMEDWDQETLEKVVESKKTDYNHNKPTDIVCKHFLDAVEKKQYGWFWVCPNGGKNCHYRHALPPGYVLKSQMKALLEEEADKLSIEEEIENQRAKVKTTTPMTPDLFYEWKKKKIEERDANLAAQQAERAKNDRMSGRELFLSNASLFVDDAEAYEKYQREPEYDETEQNGNVNTAQDGPSTSAGADGEALDDIDDDEDELDMDELNELEASLAKTSIQIKETGAEA* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00886 360 MobiDBLite consensus disorder prediction 293 338 - -
Lapu7g00886 360 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Lapu7g00886 360 Coils Coil 246 266 - -
Lapu7g00886 360 Coils Coil 53 73 - -
Lapu7g00886 360 Coils Coil 206 228 - -
Lapu7g00886 360 Coils Coil 339 359 - -
Lapu7g00886 360 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 357 - -
Lapu7g00886 360 MobiDBLite consensus disorder prediction 301 315 - -
Lapu7g00886 360 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Lapu7g00886 360 Gene3D - 87 203 - -
Lapu7g00886 360 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Lapu7g00886 360 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Lapu7g00886 360 SMART c3hfinal6 158 195 IPR000571 GO:0046872
Lapu7g00886 360 Gene3D - 204 279 - -
Lapu7g00886 360 Pfam DRG Family Regulatory Proteins, Tma46 215 300 IPR032378 -
Lapu7g00886 360 MobiDBLite consensus disorder prediction 322 338 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu7g00886 DFRP_C 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00886 - - gmx:100778701 613.224