Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00875 ATGATGGTTAGATCCTGTTGGAAACCAATTGCTGATGGTGACGAAGGAGATGGAAGTGGGAGAGTTGATGGACTTCTATGGTACAAGGATTTGGGGAACCATCTTTATGGGGAATTCTCAATGGCTGTAGTTCAGGCCAACAGTTCATTAGAGGATCGAAGTGAACTTGAATCTGGCCCTCTGAGTTCCAACCCCGTGGGTCCTCAAGGGACCTATATAGGTGTCTATGATGGCCATGGTGGAAGCGAGGCCTCACAGTTTGTCAGTGACAATCTCTTCTGCAATCTCAAAAGGCTTGCAGCTGAACATCAAGGTATGTCAGAACATGTTATCAAAAGGGCATATTCAGCAACAGAGGAGAGTTTTCTGTCTCTTGTGAAGAAACAGTGGCTGAGTAAGCCTCAGATTGCATCTACGGGCACTTGTTGCTTGGTGGGGGTAATTTGCAATGGAATGATATATATTGCAAATTCTGGAGACTCCCGGGTGGTGTTAGGAAGAGTGGAGAGAGCAACTAGGGAAACAGAAGCTATACAATTATCTACCGAACACAATGTTAACCAAGAAACAGTGAGAGATGAACTTCGCTCAAAGCACCCTTTTGATTCACAAATCGTGGTATTGAGACAAAACGTTTGGCGTGTGAAAGGCCTCATACAGGTTTCACGATCAATTGGGGACGCATATCTGAAGAAAGCAGAATTCAACAGGGATCCTCTACCAGCAAAGTATAGGCTAGCAGAAACATTCTTCAGGCCAATTCTCAGTTGTGAGCCATCAACATCATCCCACACACTCCATCCTGATGACCAATTTCTCATATTTGCTTCCGATGGTTTGTGGGAGCATCTTACCAACCAAGAGGCTGTTAACATAGTCAACAACAACCCACCAAACGGAATTGCCAGAAGACTTGTGAAAGCTGCACTCAGAGAAGCTGCTAAGAAGTGTGAAATGAGACTTTCTGACCTCCAAAAGATTGAGCAAGGGATGAGGAGGCACATCCATGATGACATAACAGTGATTGTGGTGTTTCTTAATTCCAAAAGTGAGAACACCTCTCTCTGTGGTTCTCCTCTTTCAATCAAGGGAGGTGGGTCTGCCAATTCCTAG 1113 0.4483 MMVRSCWKPIADGDEGDGSGRVDGLLWYKDLGNHLYGEFSMAVVQANSSLEDRSELESGPLSSNPVGPQGTYIGVYDGHGGSEASQFVSDNLFCNLKRLAAEHQGMSEHVIKRAYSATEESFLSLVKKQWLSKPQIASTGTCCLVGVICNGMIYIANSGDSRVVLGRVERATRETEAIQLSTEHNVNQETVRDELRSKHPFDSQIVVLRQNVWRVKGLIQVSRSIGDAYLKKAEFNRDPLPAKYRLAETFFRPILSCEPSTSSHTLHPDDQFLIFASDGLWEHLTNQEAVNIVNNNPPNGIARRLVKAALREAAKKCEMRLSDLQKIEQGMRRHIHDDITVIVVFLNSKSENTSLCGSPLSIKGGGSANS* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00875 370 Pfam Protein phosphatase 2C 61 315 IPR001932 -
Lapu7g00875 370 PANTHER PROTEIN PHOSPHATASE 30 344 IPR015655 GO:0004722|GO:0006470
Lapu7g00875 370 SMART PP2C_4 32 344 IPR001932 -
Lapu7g00875 370 SUPERFAMILY PP2C-like 47 348 IPR036457 -
Lapu7g00875 370 ProSiteProfiles PPM-type phosphatase domain profile. 35 346 IPR001932 -
Lapu7g00875 370 Coils Coil 307 327 - -
Lapu7g00875 370 CDD PP2Cc 36 346 IPR001932 -
Lapu7g00875 370 FunFam Phosphatase 2C family protein 27 355 - -
Lapu7g00875 370 Gene3D - 29 354 IPR036457 -
Lapu7g00875 370 ProSitePatterns PPM-type phosphatase domain signature. 72 80 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00875 Lapu-Chr7 10536917 10553725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00875 2 366 PP2C-type Phosphatase Gene Family AT3G12620 65.041 7.28e-180 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00875 K01102 - gmx:100819870 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00875 7 10536917 10553725 Lapu7g00875 7 10536917 10553725 ECH
Lapu6g00469 6 4903821 4906645 Lapu7g00875 7 10536917 10553725 PCT