Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00873 ATGGAAGAAACAACATCAACTATCATCATGACTGCACTCTCCACCCTCACCCCTTCCCAATTCTCAGATCTCACGCACTCCATTTTCTCCGCCACCTACCACCACCATCGCCGCCTAGCCTCCCTCCTTTCTTCGCCAGCTCTCTTCTCTCTAACCCTCCACCACCTCCACAACCTCTCCCTTCCCCAGAAGACCCTCCTCATCGCCCGCCACCTCCTCTCCTCCCTCCACCTCCTCACTGCCACCTCCCCGCCGCCGTCCACAGCCACGAGGCAGCGCGACCTCGACGCTGCGCTCCTCCTCCTCCTCCTCTGCGAAACGCACAACCACAATCCACATGCCCTCGAGGCACCCTTTTCCCAATGGAGGGTCAACCTCAGCACCATCTTCTCCGATTCATTGATGACTCTTTCCTTTGCACCCTTTGGGGCATGCATGGGCTCCACGGTTCTGATTCCCTTTGTTGAGACCGTGACGCGGTGCTGGAGACTAGTCGGCGCACTGGACTGCAGCGGAGGAAAAGAATCGGGAGAGGTGGCGGCTTCGGCTGCGGCGGTGGTGGCGCTGCCGTCGTTGGAGGTGAGGGCCGGTGGGAGAGAGTGTGTGATATGCAGAGAGGAGATGAAAATAGGGAGGGACGTGTGCGAGTTGCCATGTCAGCACTTGTTTCATTGGATGTGTATCTTACCGTGGCTGGGGAAGAAGAACACGTGTCCTTGCTGTAGGTTTCGGTTACCGTCCGATGATGTCTTCGGAGAGATCCAACGGCTATGGGAAGTCTTGGTTAAAACGGCCTCAAAAGATTCGTAG 810 0.5728 MEETTSTIIMTALSTLTPSQFSDLTHSIFSATYHHHRRLASLLSSPALFSLTLHHLHNLSLPQKTLLIARHLLSSLHLLTATSPPPSTATRQRDLDAALLLLLLCETHNHNPHALEAPFSQWRVNLSTIFSDSLMTLSFAPFGACMGSTVLIPFVETVTRCWRLVGALDCSGGKESGEVAASAAAVVALPSLEVRAGGRECVICREEMKIGRDVCELPCQHLFHWMCILPWLGKKNTCPCCRFRLPSDDVFGEIQRLWEVLVKTASKDS* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00873 269 SMART ring_2 201 241 IPR001841 -
Lapu7g00873 269 SUPERFAMILY RING/U-box 197 247 - -
Lapu7g00873 269 CDD RING-H2_PA-TM-RING 200 242 - -
Lapu7g00873 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 248 IPR013083 -
Lapu7g00873 269 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Lapu7g00873 269 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 94 243 - -
Lapu7g00873 269 Pfam Ring finger domain 200 242 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00873 Lapu-Chr7 10505247 10506548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00873 1 265 C3H Transcription Factor Family AT5G02750 50.357 5.19e-82 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00873 - - gmx:100818800 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00873 7 10505247 10506548 Lapu7g00873 7 10505247 10506548 ECH