Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00861 ATGGGTAACGCCCATCGACACCACCATCGCAAACACCCTAACTCCGTTCCTCCGCCCCATAAATACGATCATCCCCCGCCATTCCCAACCCCACCACCACCCGTAGCCAATTCCAACATGCTCTCACTCCCTTACACCCACGTCGACACCACCCTCCGCGCCCTCGCCGCTCAAGCCGAGGGCTTCGGCCGCTGCGCCGTCGGCGGCCTCCACGGTCCCCTTCACCACGTCACCTCGCTCGCAGACGATGGACCGGGGTCGCTGCGTGAGGCGTGTCGCGTAAAAGAACCGTTGTGGATTGTGTTTGAGGTGTCCGGCACCATTCATCTCTCCTCGTACCTGAACGTGTCGTCTCACAAGACCATCGATGGTCGTGGCCAGAGGATTAAACTCACCGGGAAAGGGTTGCGCCTGAAGGAATGCGAACACGTCATAATCTGCAATTTGGAGTTCGAAGGAGGCAGAGGGCATGATGTTGATGCCATTCAGATCAAACCTAATTCCAAACACATATGGATTGATCGTTGCACGCTCTCTGATTATGATGACGGGCTTATAGACATCACACGAGAAAGCACGGACATTACTATCTCGAGGTGTCACTTCTCTCAGCATGACAAAACAATGCTTATTGGGGCTGATCCATCGCATGTTAACGATAGGTGCATGAGGGTCACTATACACCATTGTTTTTTCAATGGGACGCGACAGAGGCACCCTCGTGTTAGGTTTGCGAAAGTGCATCTCTACAATAATTATATCAGAAACTGGGGCATTTATGCTGTGTGTGCTGGTGTGGAAGCCCAGATATTCTCGCAAAATAATATCTATGAAGCGGGACAGAAGAAGGTGGCTTTTAAGTACCTTACTGAAAAGGCAGCAGACAAGGAAGTGGGAACAAGCGGCAACATAAGGTCTGAGGGAGACTTATTCTTAAATGGTGCTCAACCAGGGTTACTGACTCAGAATGAAGGGTGCAAAATGTTTCATCCCAGTGAACACTATCCCTCATGGACAGTGGAAGCTCCTACAGACGATCTAAAACACATTCTTCATCACTGCACTGGATGCCAATCTGTTGCTAGGCCAGCAGATCAATCACTTTGA 1107 0.5077 MGNAHRHHHRKHPNSVPPPHKYDHPPPFPTPPPPVANSNMLSLPYTHVDTTLRALAAQAEGFGRCAVGGLHGPLHHVTSLADDGPGSLREACRVKEPLWIVFEVSGTIHLSSYLNVSSHKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDAIQIKPNSKHIWIDRCTLSDYDDGLIDITRESTDITISRCHFSQHDKTMLIGADPSHVNDRCMRVTIHHCFFNGTRQRHPRVRFAKVHLYNNYIRNWGIYAVCAGVEAQIFSQNNIYEAGQKKVAFKYLTEKAADKEVGTSGNIRSEGDLFLNGAQPGLLTQNEGCKMFHPSEHYPSWTVEAPTDDLKHILHHCTGCQSVARPADQSL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00861 368 MobiDBLite consensus disorder prediction 1 15 - -
Lapu7g00861 368 SMART amb_all 85 283 IPR002022 -
Lapu7g00861 368 Pfam Pectate lyase 113 277 IPR002022 -
Lapu7g00861 368 MobiDBLite consensus disorder prediction 19 35 - -
Lapu7g00861 368 SUPERFAMILY Pectin lyase-like 58 359 IPR011050 -
Lapu7g00861 368 Gene3D - 44 354 IPR012334 -
Lapu7g00861 368 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Lapu7g00861 368 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Lapu7g00861 368 PRINTS Pollen allergen Amb family signature 113 129 IPR018082 -
Lapu7g00861 368 PANTHER PECTATE LYASE 18-RELATED 48 317 IPR045032 GO:0030570
Lapu7g00861 368 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00861 Lapu-Chr7 10352379 10355599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00861 80 368 Polysaccharide Lyase AT3G55140 76.207 1.33e-169 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00861 K01728 - gmx:100814368 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00861 7 10352379 10355599 Lapu7g00861 7 10352379 10355599 ECH