Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00838 ATGAATCACTGTGTTCCAGATTTCGAAATCCAAATGGACCACGACGAAGAATTCCCAATTCCCGTCTCAAAGAAACCCTCTGTGCAAAACGATGGGATCACGGAACTGTTATGGCAAAACGGCCAGGTTGTGATGCACAGCCAAAACCATCGACCACTCAGAAAGCCGCCGCAGACGTTGGTTTCCGGCAGCAGTTACGGCGGCGTTATTTCCGCTAGGGAGATTCGATCCTCTGAAGCAGAAAACTACGCTAACCAACACTTGTTCATGCAAGAAGACGAAATGGCTTCGTGGCTCCACTATCCAATCCACGAAGATCCTCCTCCCTTCGATCACCATGATTTCTGCGCCGACATTCTCTACCCACCGCCAAACGCAATCGCGAGCCAGAGTCACAACAGCGCCGCCATGCAATCCTCCGTTCGCACGACGGAGCTTCGGCATCCGGCTCCTCGGCCGCCGATTCCGCCGTCGCGGCGGCCAGTGCAGGCGGCAAACAGGATGCAGAATTTCGCGCACTTCTCGAAGCACGGCAATGAGTCGTCGAGTTCGAAGGCCACGGCGCCGCCGCCGACGGTGGTGGATTCCTGCGAGACGCCGATGGCGACGGCGGAGCACGCTGAAACCGGCCGCGTGAGCGTGACCGCCGCCGATGCCGATAAGGCGGCGGAGTCTGGAGGAAGGGAGACGGCGACGTGCGATGTGACGGTGACGTCATCTCCTGGAGGTTCAAGCGGGAGCGCGGAACCGGTTCAGAGGGAACTGGACCGGAAGAGGAAGGGGAGAGAACCGGAGGAGTCTGAGTTTCAGAGCGAGGACATCGATTTGGAATCTCCGGAAGCTAAAAAACAAGGGCGTGGTTCTACATCTACTAAGAGATCCCGTGCTGCAGAAGTCCACAATCTCTCCGAGAGGAGGCGTCGTGATAGAATTAATGAAAAAATGAAAGCTTTGCAAGAACTGATACCTCGATGCAACAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAATATTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGCGGCATGGTACCCATGATGTTTCCTGGAATCCAACAGTATATGCCGCCAATGGGAATGGGAATTGGCATGGGTATGAGCATGGAAATGGGAATGAACAGACCGGTAATGCCGTTTCCCAATATGTTAACCAGTTCAACTTTGCCAGCAGCAACTGCAGCTGCTCATTTGGGACCGAGGTTCCCTATGCCTCCTTTCCATATGCCCCATGTTCCTGCCCCTGATTCATCCAGAATGCAAGCACCACATCAGTCAGATAATAATATGCTTAACGCACTTGGTACACAAGATCCAGATCAATCACGTATCCCAAACTTCACCGATCCTTATCAGCAATACGTCGGCCTCCAACAGGTGCAGTTACAATTAATGCAGGCAATGAACCAAGCAAATGTCAGCAAGCCTAGTACCAGTACGGGTCAAGAGAATCCAGAAAAACATCAGTCAGACGAAACATGA 1521 0.5247 MNHCVPDFEIQMDHDEEFPIPVSKKPSVQNDGITELLWQNGQVVMHSQNHRPLRKPPQTLVSGSSYGGVISAREIRSSEAENYANQHLFMQEDEMASWLHYPIHEDPPPFDHHDFCADILYPPPNAIASQSHNSAAMQSSVRTTELRHPAPRPPIPPSRRPVQAANRMQNFAHFSKHGNESSSSKATAPPPTVVDSCETPMATAEHAETGRVSVTAADADKAAESGGRETATCDVTVTSSPGGSSGSAEPVQRELDRKRKGREPEESEFQSEDIDLESPEAKKQGRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPMGMGIGMGMSMEMGMNRPVMPFPNMLTSSTLPAATAAAHLGPRFPMPPFHMPHVPAPDSSRMQAPHQSDNNMLNALGTQDPDQSRIPNFTDPYQQYVGLQQVQLQLMQAMNQANVSKPSTSTGQENPEKHQSDET* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00838 506 MobiDBLite consensus disorder prediction 128 163 - -
Lapu7g00838 506 PANTHER TRANSCRIPTION FACTOR PIF3 21 176 IPR044273 GO:0003700|GO:0006355
Lapu7g00838 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 295 344 IPR011598 GO:0046983
Lapu7g00838 506 MobiDBLite consensus disorder prediction 481 506 - -
Lapu7g00838 506 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 298 373 IPR036638 GO:0046983
Lapu7g00838 506 MobiDBLite consensus disorder prediction 175 190 - -
Lapu7g00838 506 MobiDBLite consensus disorder prediction 427 460 - -
Lapu7g00838 506 MobiDBLite consensus disorder prediction 175 304 - -
Lapu7g00838 506 FunFam Basic helix-loop-helix transcription factor 290 353 - -
Lapu7g00838 506 Gene3D - 290 353 IPR036638 GO:0046983
Lapu7g00838 506 MobiDBLite consensus disorder prediction 432 460 - -
Lapu7g00838 506 CDD bHLH_AtPIF_like 295 358 IPR047265 -
Lapu7g00838 506 MobiDBLite consensus disorder prediction 251 267 - -
Lapu7g00838 506 Coils Coil 301 321 - -
Lapu7g00838 506 MobiDBLite consensus disorder prediction 231 247 - -
Lapu7g00838 506 MobiDBLite consensus disorder prediction 128 145 - -
Lapu7g00838 506 SMART finulus 301 350 IPR011598 GO:0046983
Lapu7g00838 506 Pfam Helix-loop-helix DNA-binding domain 299 345 IPR011598 GO:0046983
Lapu7g00838 506 MobiDBLite consensus disorder prediction 481 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00838 Lapu-Chr7 9983688 9990376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00838 1 350 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 39.637 8.86e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu7g00838 HLH 6.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00838 - - gmx:100788491 717.613