Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00823 ATGGGAGAAGAAGCAGTTTGTGTGCATGCATTAGAAGAAGGAAGGAAGGAAAACAATGAGGAATCAAGGACGGAACTGAAGCGTGACTACAACCAATGCGTTACTGATACCGAAACTCACCTGTTTCCTCATAAGAAACAAGTGAAAGAAGTTTCGAATGATGAAGTGCGCTCTGAGGTTTCTAACCCAAACGTTTCTGCAGCAGAGCATGCACTAACTTTTCAAGATATCAGTAGCCAACCAACTGAATCCGCAGATGTTAACCATGCAGAGTGTGGGGAGCTAACGTCCGCCTGTTTGGAGAATTCAAGCTCTGATGAGACCTTGAGTGATGAAGCTGGTGATCAGAATATCACTACTACCACTAATAACAATAATAATAAAAATAATACTTCTCAGATTAACAAGGACACGAGTAGTGCTGCAATAACATCCTGTGTTGTGATGGAAGTCCCCAAGCATGCTAGTTCATCTGGGATCAGGAAGATTACTTTTAAGTTCAGTAAAAAGAAAGAGGACTATGGTTACCAACCACCTGCTCCGGTGCACCGTTCTGCTCTTTACACGGATGGCAATCACATTGGTTTTCATGGGGTTGATGAATATTTGGCAAGGGATTATTGTAGTAGTGGGTTGGTAGAAAGCACGGGACATGCTCATGATGGAGATTTGGACTTGTACGCTCGCAATATGGAATTGAAAATGTCCAAGAAAGTAGTTCCCAACTGCTACCCTACAAATGTCAAAAAGCTTTTATCAACTGGCATCCTTGACGGAGCTGTAGTGAAGTATATTTACAATCCTGGAAAGGTTGAGCTACAGGGGATTATTGATGGTGGTGGATATTTGTGTGGCTGTTCAATGTGCAATTACTCTAGAGTTCTTAGTGCCTATGAGTTTGAGCAGCATGCTGGAGCCAAGACTAGACATCCAAATAATCATATATTCTTAGAAAATGGAAGACCGATATATAGTATTATACAGGAAATAAAAACTGCTCCACTTAGTATACTAGATGAGGTTATAAAGAATGTGGCTGGCTCCTCTGTCAATGAGGACTCTTTCCAGGTTTGGAAAGAAAGTCTTCTACACAGCAATGGCAAGGTTCAGGCATATAAAAGTTGTAGCACCAAACTTGTTGGCATGTCTCATACAAACATAAGTCAATCTGTAGATAGTACTAGCCACTTGTCATCTTTGCATATGCCAAGTCATTATGAGCAGCTCAAGTATATGAATCAGACAACTGACGAATGGAAACGTGTGGTGAAAAAGTCAAGCTCCTACTCTTCTAACTCTGGTGTACTGCTGAAAAGAAGTGCTGATGGTTGCACCAAGAGAAGGGACAATGATTTACACAGGTTACTTTTTATGCCAAATGGGCTACCAGATGGTGCTGAGTTGGCTTATTATGTTAAAGGACAGAAATTACTCGGAGGTTACAAACAGGGAAGTGGTATAGTATGTGGTTGTTGTGATATCGAGATAAGCCCTTCACAGTTTGAAGCCCACGCTGGAATGGCTGCTAGGCGACAACCTTATCGACACATATATACTTCCAATGGATTAACACTTCATGATATAGCTCTCTCATTGGCAAATGGTCAAAATCTTACCACAGGAGACAGTGATGATATGTGTGCAGTATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGCCCTAGGGCCTTTCATACAGCCTGCTTGGGTTTACAATGTGTTCCAGATAGTGGTTGGCAATGTCTAAATTGTGGAGATAACGCTGGTAATGGAAGAGAATCTTCTATTGTAAGGCCAATCATGATCCGGTTGACACGAGTTGATAAAACACCAGATTTTGAAATGGGTGGATGTGTTGTTTGCAGGGAACATGATTTCAGTGTTGCTAAATTTGACGAGCGAACAGTAATAATTTGTGACCAGTGTGAGAAGGAGTATCATGTTGGCTGCTTGCGGGACATTGGGTTATGTGAGTTGGAAGAGCTGCCCAAGGATAAGTGGTTTTGTTGCAGTGACTGCAATCGAATATATGTGGCTCTACAGAATTCAGTTTCTGCTGGAGCAGACATTATACCAGTTTCCTTGTCAGAACTAATAACCAGGAAGCATGAGGAGAAGGGATTATGTACCTATGGTTCCAAGGATGATATCCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCAGAACATTTACCATTGCTTTCACGAGCTGCTGCAATTTTCCGAGAGTGTTTTGATCCCATTGTTGCAATATCTGGTCGTGATCTGATTCCTGTTATGGTCTACGGGAGAAATATTTCTGGCCAAGAGTTTGGGGGGATGTATTGCATTGTTTTAATAGTGAATTCTGTTGTAGTATCTGCTGGGCTTCTGAGGATTTTTGGCCGTAATGTTGCTGAGCTTCCACTCGTTGCTACTAGTAGAGTACATCAAGGAAAAGGATATTTCCAAGTGTTATTCTCTTGCATCGAGAGGTTGCTGTCTTCTCTAAACGTAGAAAAGCTGGTGCTTCCTGCAGCAGGGGATGCAGAGTCAATTTGGACTAAGAAATTGGGCTTCCGAAAGATGAGTGAAGATCAGTTATCCAAACATCTCAGAGAGGTGCAGCTAACCCTCTTCAATAAAACTTCAATGCTGGAGAAGACAGTGCAGCAGACTATAGAATGA 2676 0.4178 MGEEAVCVHALEEGRKENNEESRTELKRDYNQCVTDTETHLFPHKKQVKEVSNDEVRSEVSNPNVSAAEHALTFQDISSQPTESADVNHAECGELTSACLENSSSDETLSDEAGDQNITTTTNNNNNKNNTSQINKDTSSAAITSCVVMEVPKHASSSGIRKITFKFSKKKEDYGYQPPAPVHRSALYTDGNHIGFHGVDEYLARDYCSSGLVESTGHAHDGDLDLYARNMELKMSKKVVPNCYPTNVKKLLSTGILDGAVVKYIYNPGKVELQGIIDGGGYLCGCSMCNYSRVLSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEIKTAPLSILDEVIKNVAGSSVNEDSFQVWKESLLHSNGKVQAYKSCSTKLVGMSHTNISQSVDSTSHLSSLHMPSHYEQLKYMNQTTDEWKRVVKKSSSYSSNSGVLLKRSADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGSGIVCGCCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHTACLGLQCVPDSGWQCLNCGDNAGNGRESSIVRPIMIRLTRVDKTPDFEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCSDCNRIYVALQNSVSAGADIIPVSLSELITRKHEEKGLCTYGSKDDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGRNVAELPLVATSRVHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKHLREVQLTLFNKTSMLEKTVQQTIE* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00823 891 ProSitePatterns Zinc finger PHD-type signature. 620 675 IPR019786 -
Lapu7g00823 891 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 534 613 IPR013083 -
Lapu7g00823 891 FunFam PHD zinc finger protein 618 678 - -
Lapu7g00823 891 SMART PHD_3 619 676 IPR001965 -
Lapu7g00823 891 SMART PHD_3 546 587 IPR001965 -
Lapu7g00823 891 Gene3D - 717 886 - -
Lapu7g00823 891 SUPERFAMILY FYVE/PHD zinc finger 616 673 IPR011011 -
Lapu7g00823 891 ProSitePatterns Zinc finger PHD-type signature. 547 586 IPR019786 -
Lapu7g00823 891 CDD PHD1_AIRE 546 586 - -
Lapu7g00823 891 Pfam Tify domain binding domain 480 529 IPR032308 -
Lapu7g00823 891 Pfam Tify domain binding domain 275 329 IPR032308 -
Lapu7g00823 891 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 770 862 IPR016181 -
Lapu7g00823 891 ProSiteProfiles Zinc finger PHD-type profile. 544 589 IPR019787 -
Lapu7g00823 891 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 534 612 - -
Lapu7g00823 891 MobiDBLite consensus disorder prediction 101 136 - -
Lapu7g00823 891 FunFam PHD zinc finger protein 767 874 - -
Lapu7g00823 891 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 616 678 IPR013083 -
Lapu7g00823 891 PANTHER AUTOIMMUNE REGULATOR 12 885 - -
Lapu7g00823 891 SUPERFAMILY FYVE/PHD zinc finger 542 586 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00823 Lapu-Chr7 9777284 9787642 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00823 1 886 PHD Transcription Factor Family AT3G53680 51.934 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00823 - - gmx:100808999 1610.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00823 7 9777284 9787642 Lapu7g00823 7 9777284 9787642 ECH
Lapu7g00823 7 9777284 9787642 Lapu1g01117 1 24231980 24238032 ECH