Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00813 ATGCTACCCATTCTGAAGAGACAGAGAGGAGACGAAACACAAAAGATTAAGGATTTGCCCAAGACTTTCTCGCCACACGAGTTCCAGTGCAAGACGTGTAACCGCAAATTCTCCTCGTTCCAAGCGCTGGGCGGGCACCGGGCCAGCCACAAGAAGCCCAAGTTCCACGGGGAAGAGGCCAAGGATCTGAGTCTGGGTGGGAAGCCCAAAACGCACAAGTGTTCGATTTGCGGACAGGAATTCCCCTTGGGCCAGGCCCTGGGAGGGCACATGAGAAAACACAGGGGTGGCATGAACCCAGGGTTTTCTTCTGTTATTGCCGAAGCTCCGTTTCTGAAACGTTCCAATAGCAGCAAGAGGGTGATGTGCTTGGAGTTGGACCTCAACCTAACACCGTTGGAAAATGACTTGAAGTTGCTGTTCGGAAACAACGCTCCCTCAGTGCATCTTTCCTTGTAG 459 0.5251 MLPILKRQRGDETQKIKDLPKTFSPHEFQCKTCNRKFSSFQALGGHRASHKKPKFHGEEAKDLSLGGKPKTHKCSICGQEFPLGQALGGHMRKHRGGMNPGFSSVIAEAPFLKRSNSSKRVMCLELDLNLTPLENDLKLLFGNNAPSVHLSL* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00813 152 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 99 IPR013087 -
Lapu7g00813 152 SUPERFAMILY beta-beta-alpha zinc fingers 28 94 IPR036236 -
Lapu7g00813 152 SMART c2h2final6 28 50 IPR013087 -
Lapu7g00813 152 SMART c2h2final6 72 94 IPR013087 -
Lapu7g00813 152 MobiDBLite consensus disorder prediction 47 66 - -
Lapu7g00813 152 Gene3D Classic Zinc Finger 26 94 - -
Lapu7g00813 152 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Lapu7g00813 152 Pfam C2H2-type zinc finger 28 53 - -
Lapu7g00813 152 Pfam C2H2-type zinc finger 72 95 - -
Lapu7g00813 152 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Lapu7g00813 152 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Lapu7g00813 152 MobiDBLite consensus disorder prediction 52 66 - -
Lapu7g00813 152 PANTHER ZINC FINGER PROTEIN ZAT5 24 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00813 Lapu-Chr7 9650911 9651369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00813 24 142 C2H2 Transcription Factor Family AT2G37430 59.200 7.10e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu7g00813 zf-C2H2_6 9.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00813 - - vra:106771374 235.343