Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00775 ATGGAGGAAGAGGAGGATCGAAATTTACTATCTAGTTTGGGCGTAAAGTCCGCCAATCCCGAAGACATTGAACGCGACGTTTTGGAAAAGGCTACTAGGAATGATTCAGTGACCGTTACAGAAGCTGAAGGTTGTGCTAAGGAAGAACTTTCTGATTTACCTGAAAATGTTGATCCATCAGCTCATGCTAAAGCTGAACTTCATCAGAAGTTGAGAGCTGTTCAATTTGAAATTGATGCGGTTGCCTCCACCGTTGAGCGGTTGAGAAATGTGGAAAATAATGAAGAATGTAGTGATGCTGGTGAAGACGGCTTGGTGCCAGCGATTGCTGAGGGTGATTCCTCGGACAATTCAAACCTTCAGTGTGTTCTTGCTGCCGATAGGTTGAAGAGTCTGAAGAAGACGAAAGCTCAACTAGAGAAAGAGCTTTTGAATTTGTCCAGGGATGATGCTTCCAAAAGTGTTGAGGATGAACAATTGATCTTTAGTTTAGTTAGGGAAGAACGGAAACCAAAGAGGAAGGTTAAAGAAGATAAAACATCAAATAAAAGCAAGGGAAAGCGACTTAAGAAAGTTTCGTTTGATGATGATGTTGATTTTGATACTGTTCTGGATGCAGCCTCTGCGGGCTTTGTTGAAACAGAAAGGGATGAAATGGTGAGGAAAGGAATTTTAACCCCTTTTCACAAGTTAAAGGGCTTTGAGCGCCGTTTTCAACAACTAGAAACATCAACTAGCCATAATGCAGCTGAGGAAGAAAATGCTAGTGATCTTGCTGCTATCAGTGTTGAAAGAGCTGCCAAATCCATGTATGAGGCAGCAAGGTCTCGCCCAACCACCAAACTGCTTGAGCCTGAAGACGCACCAAAGCTTGATGCACCCACTCTTCCATTTCGAAGGCTCAAAAAACCACTACAATCTTCCAAACCTCTAAATAGAGAGGTGGAGCTAAACAAAGATTCAAAAAGGAAAAAGAGGCGGCCACTGCCTGGTAGGAAATGGACCAAGCGTGTTTCTTGCGGGGATACACGTCTGGAAGAAAGTGAAAATGCAGATGGTTGCTTGGATACTTCCAGTTTTGAAAATTTAGAAGAACAGGACATTGAACTTGACGATCATGAATCTTCTTATGTAACATTAGAAGGTGGGCTGAAAATCCCTGATAAGATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAGAGAGCTGGTGGAATTATTGGTGATGAAATGGGACTTGGTAAAACTGTCCAGGTCTTATCTTTTCTTGGTGCTTTGCACTTTAGTGGCATGTACAAACCCAGCATTATTGTCTGCCCTGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTAACAAGTGGTACCCAAAATTCCATGTAGAGCTTTTACATGATTCGGCTCAAGATTCTGCTCCTAGAAAGAAGCGAGCTAAATCCAAAGAAACAGACTTTGAAAGCAATAGTTCAAGTGACAATGATTATGAGAAAAGTGTGCCATCTAGAAACACAAGAAAATGGGAATCCCTGATAAATCGTGTCATGAGATCAGAATCTGGATTACTTATCACCACTTATGAGCAGCTCAGAATATTGGGGGATCAGTTGCTTGACATTGAATGGGGTTATGCAGTTCTCGATGAAGGGCATAAAATAAGGAATCCAAATGCTGAAGTTACCTTAGTTTGCAAGCAGCTACAAACTGTACATCGCATCATAATGACTGGTGCACCTATTCAGAATAAACTGACTGAACTGTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAATTTGCAGTTCCCATAGCAGTTGGTGGGTATGCAAATGCTTCACCGTTGCAAGTATCCACAGCATACAGGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTCCGACGAATGAAGGCTGATGTGAATGCCCAACTTCCCAAGAAGACGGAACATGTTCTATTTTGCAGTCTTACACCAGAGCAAGTATCTTCTTACAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGACGGACACAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCACCCTGATCTACTTGAAAGGGATCATGCCTTCAGTGATCCTGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTTCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTCCTTTTTACTCAAACCCAGCAAATGCTTGACATTTTTGAGAATTTTTTGACAACTTCTGGTCACATATATCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCCTTAATAGATGAATTTAATGCCTCAAGTGAAATATTTATTTTTATTTTAACAACCAAAGTTGGGGGTTTGGGGACCAATCTTACAGGTGCAGATAGGGTGATCATCTTTGACCCTGACTGGAATCCCTCAACTGATATGCAGGCCAGAGAGCGAGCTTGGCGTATCGGTCAGAAGCGGGATGTAACAGTGTATAGGTTGATAACACGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACGAATAAGATATTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTCATACTTAATGTGGATGGAGAAACTGGGTCGACTGAAACATCAAATATTTTTAGTCAAATATCTGAAGAAGTAAATGTCATTGGGACACAGAAAGAAAATAAAGATAAGTATGAACATAGCCAAGCTATCAAACTGGATTCTGAAGATGTTGCAGTTTGTAATGATGACAAATCAGAGAGAGGATCTTTGGAGGGAAAGGGGAAAGAGAAGGTTGAACATAATAATGGGGTTGATGATGAAACAAACATATTGAAAAGCCTTTTCGATGCCAATGGGATACATAGTGCCATGAACCATGATTTGATTATGAATGCCCATGATGAGGAGAAGATGAGACTTGAGGAGCAAGCATCCCAGGTCGCACAAAGAGCTGCAGAAGCTTTACGTCAGTCACGTATGCTCAGAAGCCATGATAGTGTATCTGTTCCCACATGGACTGGAAGGTCAGGAACTGCTGGTGCACCATCATCTGTTCGACGGAAGTTTGGTTCAACTGTGAATCCCCTGTTGGTAAATAAAAGCAAGGCATCTGACGAATTACCCAGCAAGGGAACTACAAAGTTAAATGGATTCGGTGCTGGGGCATCTGCGGGTAAAGCATTATCTTCTGCCGAACTATTGGCTCAAATTCGAGGTAACCAAGAGAAAGCCGTTAGTGCTGGGCTTGAACATCAGTCGGGTATGTCTTCAAGTTCCACGAATCAATCAAGATCTGTAGATGTGAGATCTTCCAGGGCTATTGCAAGTTCATCTGGATTACAACCTGAAGTATTGATTCGGCAAATCTGCACTTTTATACAACAGCGAGGGGGTAGTTCTGATTCAGCTAGCATAGTTCAGTATTTCAAGGAACGTGTTCCCTCGAAAGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATTGCGACTCTGCATAAAGGAACAAATGGATCCCATTGGGTTCTGAAACCAGACTATCAATTCTGA 3678 0.4184 MEEEEDRNLLSSLGVKSANPEDIERDVLEKATRNDSVTVTEAEGCAKEELSDLPENVDPSAHAKAELHQKLRAVQFEIDAVASTVERLRNVENNEECSDAGEDGLVPAIAEGDSSDNSNLQCVLAADRLKSLKKTKAQLEKELLNLSRDDASKSVEDEQLIFSLVREERKPKRKVKEDKTSNKSKGKRLKKVSFDDDVDFDTVLDAASAGFVETERDEMVRKGILTPFHKLKGFERRFQQLETSTSHNAAEEENASDLAAISVERAAKSMYEAARSRPTTKLLEPEDAPKLDAPTLPFRRLKKPLQSSKPLNREVELNKDSKRKKRRPLPGRKWTKRVSCGDTRLEESENADGCLDTSSFENLEEQDIELDDHESSYVTLEGGLKIPDKIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREANKWYPKFHVELLHDSAQDSAPRKKRAKSKETDFESNSSSDNDYEKSVPSRNTRKWESLINRVMRSESGLLITTYEQLRILGDQLLDIEWGYAVLDEGHKIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTPEQVSSYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFSDPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFENFLTTSGHIYRRMDGLTPVKQRMALIDEFNASSEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFILNVDGETGSTETSNIFSQISEEVNVIGTQKENKDKYEHSQAIKLDSEDVAVCNDDKSERGSLEGKGKEKVEHNNGVDDETNILKSLFDANGIHSAMNHDLIMNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSHDSVSVPTWTGRSGTAGAPSSVRRKFGSTVNPLLVNKSKASDELPSKGTTKLNGFGAGASAGKALSSAELLAQIRGNQEKAVSAGLEHQSGMSSSSTNQSRSVDVRSSRAIASSSGLQPEVLIRQICTFIQQRGGSSDSASIVQYFKERVPSKDLALFKNLLKEIATLHKGTNGSHWVLKPDYQF* 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00775 1225 MobiDBLite consensus disorder prediction 479 500 - -
Lapu7g00775 1225 Gene3D - 661 963 IPR027417 -
Lapu7g00775 1225 CDD SF2_C_SNF 737 862 - -
Lapu7g00775 1225 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 406 605 IPR014001 -
Lapu7g00775 1225 PANTHER SNF2/RAD54 FAMILY MEMBER 159 1207 - -
Lapu7g00775 1225 SMART ultradead3 390 613 IPR014001 -
Lapu7g00775 1225 MobiDBLite consensus disorder prediction 1121 1147 - -
Lapu7g00775 1225 CDD CSB_WHD 1158 1224 - -
Lapu7g00775 1225 MobiDBLite consensus disorder prediction 1038 1064 - -
Lapu7g00775 1225 MobiDBLite consensus disorder prediction 275 336 - -
Lapu7g00775 1225 Pfam SNF2-related domain 397 719 IPR000330 GO:0005524|GO:0140658
Lapu7g00775 1225 MobiDBLite consensus disorder prediction 307 323 - -
Lapu7g00775 1225 MobiDBLite consensus disorder prediction 1034 1064 - -
Lapu7g00775 1225 CDD DEXHc_ERCC6 394 604 - -
Lapu7g00775 1225 MobiDBLite consensus disorder prediction 1 51 - -
Lapu7g00775 1225 Pfam Helicase conserved C-terminal domain 744 851 IPR001650 -
Lapu7g00775 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 655 IPR027417 -
Lapu7g00775 1225 Coils Coil 1007 1034 - -
Lapu7g00775 1225 SMART helicmild6 768 851 IPR001650 -
Lapu7g00775 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 657 914 IPR027417 -
Lapu7g00775 1225 Coils Coil 122 149 - -
Lapu7g00775 1225 MobiDBLite consensus disorder prediction 479 508 - -
Lapu7g00775 1225 Gene3D - 362 654 IPR038718 -
Lapu7g00775 1225 FunFam Protein CHROMATIN REMODELING 8 372 654 - -
Lapu7g00775 1225 MobiDBLite consensus disorder prediction 1123 1147 - -
Lapu7g00775 1225 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 742 901 IPR001650 -
Lapu7g00775 1225 FunFam DNA excision repair protein ERCC-6 662 941 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00775 Lapu-Chr7 9248121 9255179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00775 366 904 RAD5 or RAD16-like Gene Family AT1G02670 22.347 6.08e-24 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu7g00775 SNF2_N 2.3e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00775 K10841 - gmx:100820025 2113.96