Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00768 ATGCATATAGGTCAGACAGATACAACTTCTGTGAAATGTCTGATCAACAGCATTTCTCGATTCATTCATCTGGTTTCATGCCAAACAATGAAACCTATGCCTTTTCAGAAGATCTGTAATAATATGGTTGGGGTGTTAAAGCGTTTGAAGCCAGTGCTTGATGATGTTATGGATCTCCAAATCCCATCAGATGTAAATCTATGTAAAGAGTGTGAAGAATTGGATAAGCGAGTTAATGAAGCTAGAGAGTTCATTGAAAAATGGAGTCCAAAGATGAGCAAGATTCACGGTGTTCTACAAGGTGGTACATTGCTGATCAAGTTACAGAGCACTTCACTAGATATCTGCCACATGATAGTTAGATCCTTACAGTCACCTCCATCTGCATCAGTTTTGGCTAATCTCCAGCACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAATTGCAATGGTGTATATAGAAGAAGCACTGCGAAACCAAAGAGACAATATTGAACCATCCAAGGAGCATCTCAAGGAAATTATTGAGTTACTTAAATTAACATCAAATCAGGAGCTCTTAAAAGAAAGTATTGCTGTAGAAAAGGAAAGGTTGAACATTGAAGCCAATAAGATGATAGCGGACATAGAAGAAATTAATGAAATTGTGAATCTTGTCCGTAGTTTGCGTGATTATGTGATGAAAACTGATTGCCCTGTAGTCAAGAGTGGTCTCTCCGTCCCTCCATACTTCCTCTGTCCTTTATCATTGGAACTCATGACGGATCCTGTTATTGTGGCTTCAGGTCAAACATACGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTGACAGTTTGTCCCAAAACTCGTCAGAGGCTTACTCATACAAATCTCATTCCCAATTACACTGTCAAAGCTATGATAGCAACTTGGTGTGAGGAAAATAATGTCAAACTTTCTGGTAACTCTGAGCACAAAAAATCTGCCTGTGTCACATCTCCCACGGATAATTTATTGCCTCAAGATTTAACTCATGATTGCTGTGTTGGGTCTTTATCTAGTAGCAATTCCATTTCAAGATCATCTCTTCAAACCGAAAATGCATTTGAAAAGCAAAAGGGCAATAACTCTTTCAGATTACGCGGAGAATACAATGGATGCCAGAGTGGAGCAGCTGAAAAGTGTGAGCAAGAGTCCCCGTATACTCACAGCAGAAGTGGATCATTTTCAAGTTCCATTTCTAGTACTGATTGTGCAGTTTCAAAAGAGGTGTCAGGGATATCCAATAGGCATCAAAATGTGCAGGTGCTGTCTGGAGAAATCACAAACATGTTTCCTTCTCCTGGTAGCAAACAATCAGGGATATCTCCTTGGTTATCTGGAAAGCCATTGGAAAACCCTGGATCAAATGTGGGATTGTTGGAGAATGGAAATAATAATAATAATAATAATAATAGTCTTTCAAGATTTGATTCCCATTCTGTTTTCAACTCCGGGTCAGATGAATTGACCACCTCATCTCATATCATTAGGTTGATTGAAGACCTTCACAGTCAATCAATTGAAACACAAACTACTGCTGCAGAAGAATTGAGGCTTCTTACAAAGCATAACCAGGAAAACCGTATCATTGTAGGGCGGTGTGGGACTGCCATGCCTTTGCTTTCATTGCTATATTCAGACATGAAGGTAACACAAGAGCATGCTGTGACAGCTCTACTGAACTTATCAATTAATGAAGAGAACAAGGCCTTGATCATGGAAGCAGGAGCCATAGAACCTCTTATCCATGTTTTGAAGACAGGAAATGATAGTGCTAAGGAGAATTCTGCGGCAACTCTATTCAGCCTCTCAGTAATTGAGAACAATAAGGCAAGAATTGGCCGTTCTGGAGCTGTTAAAGCTTTGGTTGATCTTCTTGCCTCGGGGACTCTTAGAGGAAAGAAGGATGCTGCTACTGCTTTATTTAACCTGTCAATATTTCACGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCAGTGAAATTTCTGGTTCGGTTAATGGACCATGCTGGTGGAATGGTTGACAAGTCAGTTGCTCTTCTGTCAAACCTGTCAACAATTCCAGAGGGCCGATTAGAAATTGCAAGGGAAAAGGGTATCCCCTTACTTGTTGAAGTTGTTGAGTCAGGTTCCCAGAGGGGAAAGGAAAATGCTGCCTCCATTCTCTTGCAATTATGCCTTCATAGTTCTAAGTTCTGTAATCTGGTTTTGCAAGAAGGAGCTGTCCCTCCCCTAGTTGCATTGTCAGTATCTGGTACACCAAGAGCAAAGGAAAAGGCACAACAGCTTCTCAGCCATTTTCGCAATCAGAGAGAAGTAGCTGCTTCTGGGAAGGGAAAATCATGA 2376 0.4078 MHIGQTDTTSVKCLINSISRFIHLVSCQTMKPMPFQKICNNMVGVLKRLKPVLDDVMDLQIPSDVNLCKECEELDKRVNEAREFIEKWSPKMSKIHGVLQGGTLLIKLQSTSLDICHMIVRSLQSPPSASVLANLQHYIQELQCLKKEIAMVYIEEALRNQRDNIEPSKEHLKEIIELLKLTSNQELLKESIAVEKERLNIEANKMIADIEEINEIVNLVRSLRDYVMKTDCPVVKSGLSVPPYFLCPLSLELMTDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLTHTNLIPNYTVKAMIATWCEENNVKLSGNSEHKKSACVTSPTDNLLPQDLTHDCCVGSLSSSNSISRSSLQTENAFEKQKGNNSFRLRGEYNGCQSGAAEKCEQESPYTHSRSGSFSSSISSTDCAVSKEVSGISNRHQNVQVLSGEITNMFPSPGSKQSGISPWLSGKPLENPGSNVGLLENGNNNNNNNNSLSRFDSHSVFNSGSDELTTSSHIIRLIEDLHSQSIETQTTAAEELRLLTKHNQENRIIVGRCGTAMPLLSLLYSDMKVTQEHAVTALLNLSINEENKALIMEAGAIEPLIHVLKTGNDSAKENSAATLFSLSVIENNKARIGRSGAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVRLMDHAGGMVDKSVALLSNLSTIPEGRLEIAREKGIPLLVEVVESGSQRGKENAASILLQLCLHSSKFCNLVLQEGAVPPLVALSVSGTPRAKEKAQQLLSHFRNQREVAASGKGKS* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00768 791 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Lapu7g00768 791 FunFam RING-type E3 ubiquitin transferase 240 315 - -
Lapu7g00768 791 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Lapu7g00768 791 Gene3D - 580 786 IPR011989 -
Lapu7g00768 791 SMART arm_5 534 574 IPR000225 GO:0005515
Lapu7g00768 791 SMART arm_5 697 737 IPR000225 GO:0005515
Lapu7g00768 791 SMART arm_5 616 656 IPR000225 GO:0005515
Lapu7g00768 791 SMART arm_5 575 615 IPR000225 GO:0005515
Lapu7g00768 791 SMART arm_5 657 696 IPR000225 GO:0005515
Lapu7g00768 791 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Lapu7g00768 791 SUPERFAMILY ARM repeat 505 777 IPR016024 -
Lapu7g00768 791 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 586 628 IPR000225 GO:0005515
Lapu7g00768 791 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Lapu7g00768 791 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 545 587 IPR000225 GO:0005515
Lapu7g00768 791 MobiDBLite consensus disorder prediction 467 482 - -
Lapu7g00768 791 Pfam Armadillo/beta-catenin-like repeat 575 614 IPR000225 GO:0005515
Lapu7g00768 791 Pfam Armadillo/beta-catenin-like repeat 619 655 IPR000225 GO:0005515
Lapu7g00768 791 MobiDBLite consensus disorder prediction 441 482 - -
Lapu7g00768 791 Coils Coil 196 216 - -
Lapu7g00768 791 MobiDBLite consensus disorder prediction 441 455 - -
Lapu7g00768 791 FunFam RING-type E3 ubiquitin transferase 489 783 - -
Lapu7g00768 791 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 627 669 IPR000225 GO:0005515
Lapu7g00768 791 CDD RING-Ubox_PUB 242 294 IPR045210 -
Lapu7g00768 791 PANTHER U BOX DOMAIN-CONTAINING 34 778 - -
Lapu7g00768 791 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 668 709 IPR000225 GO:0005515
Lapu7g00768 791 Gene3D - 469 579 IPR011989 -
Lapu7g00768 791 SUPERFAMILY RING/U-box 240 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00768 Lapu-Chr7 9121413 9126690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00768 7 791 U-box Gene Family AT3G54790 54.078 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00768 - - gmx:100800949 1315.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00768 7 9121413 9126690 Lapu7g00768 7 9121413 9126690 ECH