Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00748 ATGGCACTGAACAAGAATCACTCCTACAACAACAAGCTTGGATATGAAGCTCTCCCACCCATCAAACCCCAGGCTGAAACACTCCAACACCCACCACAACCTGCTTCCTCAGACTATGCTTTTCCCATATTTGTGATTGTCGTGCTCAGTATCCTGGCCACTGTTTTGTTGCTCCTCAGCTACTTCACTTTCTTAACCAAATACTGCTCAAACTGGCATCAAGTTAACCCAATGAGATGGATGTCCCTCCTGCGGATGAGACATGACGAGGATCCCTTTATAGCATTCTCTCCTGCCATGTGGAACCGAGGGCTTGATGAGTCTGTCATCAGAGAAATCCCAACGTTTCAGTTCATGAAAGGAGAAGAAGGTGAGGACCAAAGTGTGTATGGCTGTGTGGTTTGTTTGGCTGAGTTTAAGGAACATGATGTGCTCAAAGTTCTTCCCAACTGCAACCATGCCTTTCATTTAGACTGCATTGACGTTTGGCTTCAGACCAATTCCAATTGCCCACTTTGCAGATCAAGCATTTCAGGCAACACACACTGTCCACTGGATCATATCATAGCTCCTAGTTCTTCTCCTCAGGATTCTCAGTTGCTCTCCAACATGGGTAGTGATGAAGATTTTGTGGTTATTGAACTGGGGGGAGAGCCTGGAGCAGTGCTTCCACAGGTGCAACAAGAGTGGAATGACTCAAGGGGAAGCTTGGCGCATAGAAGCCACTCTACAAGGAAGGTGGAGCACTTGAAACCAAGGAAGTGCCACCATGTTTCTATCATGGGAGATGAGTGTATTGATATCAGAAAGAAAGATGACCAGTTTTTCATTCAGCCAATTAGAAGATCTTTCTCAATGGATTCAGCACATGATAGACAAACTTACTTGGACGCTCAAGTCAAAATACAACAAAACAGGCATCAGAATGAGGCTAGTGCCAGTGAGTATTGTAACACCAGATGTAGAAGAGCATTCTTCCCATTTTGTTACGGAAAGGGATCCAAAAGTGCAGTTCTTCCTTTGGAGAATGATGTTTAG 1038 0.4489 MALNKNHSYNNKLGYEALPPIKPQAETLQHPPQPASSDYAFPIFVIVVLSILATVLLLLSYFTFLTKYCSNWHQVNPMRWMSLLRMRHDEDPFIAFSPAMWNRGLDESVIREIPTFQFMKGEEGEDQSVYGCVVCLAEFKEHDVLKVLPNCNHAFHLDCIDVWLQTNSNCPLCRSSISGNTHCPLDHIIAPSSSPQDSQLLSNMGSDEDFVVIELGGEPGAVLPQVQQEWNDSRGSLAHRSHSTRKVEHLKPRKCHHVSIMGDECIDIRKKDDQFFIQPIRRSFSMDSAHDRQTYLDAQVKIQQNRHQNEASASEYCNTRCRRAFFPFCYGKGSKSAVLPLENDV* 346
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00748 345 SUPERFAMILY RING/U-box 109 179 - -
Lapu7g00748 345 CDD RING-H2_EL5-like 132 174 - -
Lapu7g00748 345 FunFam E3 ubiquitin-protein ligase ATL6 96 180 - -
Lapu7g00748 345 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Lapu7g00748 345 Pfam Ring finger domain 132 174 IPR001841 -
Lapu7g00748 345 SMART ring_2 132 173 IPR001841 -
Lapu7g00748 345 PANTHER RING-H2 FINGER PROTEIN ATL16 20 342 IPR044600 GO:0016567|GO:0016740
Lapu7g00748 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 180 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lapu7g00748 Lapu-Chr7 8819557 8820594 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00748 32 308 C3H Transcription Factor Family AT1G04360 44.300 1.34e-75 236