Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00734 ATGGAAGGAAACTATCTGAACAGAAATAGTAGTGCTCCACAGAGAGAAGATAGCTTTGGCTTTGAGGAGCATACATGGGGAACTTCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGCAAAAGAGAGTTTAGGTCTGCTCAAGCATTGGGTGGACACATGAATGTTCACAGAAGGGATAGGGCTAGATTGAGATCATCCTTATCTTCATGGGTTTCTGAATGCCCTAAACCTAACCCTAGCACTAAGCCTAATAACCCAACTCTTCTTCCAACCTCTTCTTCACCATCTCCTTTATCTGATGAGCCTTTCAACTGTGCGCATCCTTCTCCACTTTGCAGTCCCTGTCTCACTTTGTCTTCTTCACCCTTCCCAGCTTCTACCAGTGGAGACAAGAAACCAAGACTCACACCTTCTCATTCTCAGTTTCCTCTTTTGAGTCCTCAAAGCTGTGAAATTAAGATGATGATGAGTAGCGACAACACAAGGAGCGGTTTCAGTGCTGATGAGGAAATGAAGGGCTGTGTAGAGGAGGAGGAGGAGGAGCACAAAGATTTCAAGGACAATGAGCAAAACATTACGTTGGAATTAGGAATAGGATTGCTTAAACACCAAGAGGAGAAGTTAGATTTGGAGCTTCGACTCGGGCATTTCTAG 657 0.4429 MEGNYLNRNSSAPQREDSFGFEEHTWGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPNPSTKPNNPTLLPTSSSPSPLSDEPFNCAHPSPLCSPCLTLSSSPFPASTSGDKKPRLTPSHSQFPLLSPQSCEIKMMMSSDNTRSGFSADEEMKGCVEEEEEEHKDFKDNEQNITLELGIGLLKHQEEKLDLELRLGHF* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00734 218 PANTHER OS07G0101800 PROTEIN 11 217 - -
Lapu7g00734 218 Gene3D Classic Zinc Finger 21 79 - -
Lapu7g00734 218 Coils Coil 176 196 - -
Lapu7g00734 218 MobiDBLite consensus disorder prediction 124 145 - -
Lapu7g00734 218 SUPERFAMILY beta-beta-alpha zinc fingers 32 61 IPR036236 -
Lapu7g00734 218 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Lapu7g00734 218 SMART c2h2final6 35 57 IPR013087 -
Lapu7g00734 218 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Lapu7g00734 218 MobiDBLite consensus disorder prediction 86 101 - -
Lapu7g00734 218 MobiDBLite consensus disorder prediction 69 102 - -
Lapu7g00734 218 Pfam C2H2-type zinc finger 35 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00734 Lapu-Chr7 8643860 8644516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00734 30 218 C2H2 Transcription Factor Family AT2G42410 36.735 4.00e-24 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu7g00734 zf-C2H2_6 6e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00734 7 8643860 8644516 Lapu7g00734 7 8643860 8644516 ECH
Lapu6g00346 6 3369088 3369720 Lapu7g00734 7 8643860 8644516 PCT