Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00732 ATGATGGGTGAGAAGTTTTGTGTGAACGAAGAAGACAAGGGTGTGTTGGAGTCTGTGCTGGGTTCAGAGGCCGTTGCGTTTTTCATTTCAGCACTTTCCAATAATGTCTTTTCCAGCGTTGTTGCTCCTTCGGCCGGTGTTGACTCGTCCCTCCGTCAGAGGTTATGCCAGCTTGTTGAGGGTTCCAAGTGGAACTATGCAGTGTTTTGGCAAGCTGCTGGCTTGAAATCTGGTGGTTCTGCCTTGATTTGGGGTGATGGGCATTGCAGTGATCCCAAGGGGAAGAGGAGTGGTGTTGGAAAGGAGGATGAGCAGGAGGTGAGAAAGATGGTACTGCAGAAGCTTGATGCCTGGTTTGGTGGGTCTGTGTCAAAAGAGGCTAATTACGCGAGATTGGATGGGTTATCTGATTTGCTCATGTTTTACTTATCCTCAGTGTGTTATATATTCGGTTTTGATTCGCCATGTGGCCCTGGGACTTCATTCAAATCTGGTAAATTGATTTGGGCATCTGATGCTGCTGGTTGTTTAAATCAATTAGAATCTAGATCATTTCTAGGGAAAGTGGCTGGTCTTCAAACTGTTGTTTTTGTTCCTCTGAAATCTGGGGTAGTGGAACTTGGTTCTAATGAAGTGGTGTCTGAAGAGCAGGGTTTTGTGGAGATGGTGAGGGCAGCATTTGGGGAATCCAGTCCCGGACAGGCAAAGGTGTTTCCGAAGATTTTTGGGCATGAGTTAAGCCTGGGGGATACAAAATCTCAGTCTATAACTATTAGTTTCTCCCCGAAGGTGGAAGATGATCCTGGTTTTACTTCAGATTCCTTTGAAGTCCAAGCACTTGGGGTGAACCATGCTTATGGAAATTCTTCCAATGGAACTTTAGGGGACAGTAGTGAAGGGAAAATGTTCCCTCAATTGAATCAAATGATGGGTGGGAATTTTAATGCTCAAGCAAGGGTTCCTTGTCTAGATCTCGGTAATGAAGACACGTCCTCAATTCATGCAGATGAGCGGAAGCCCAGAAAAAGAGGTAGAAAACCTGCCAATGGTAGAGAGGAACCACTGAATCATGTTGAAGCAGAGAGACAAAGACGTGAGAAGCTTAACCAGAGGTTTTATGCCTTAAGAGCTGTTGTCCCCAATATATCTAAAATGGACAAGGCATCTTTGCTTGGTGATGCCATTACTTTCATCACCGATCTCCAGATGAAGATCAAAGTGTTAGAAGCTGAGAAGAACATGATTAACAACAAGGACCAGAGGTTATCCTTGCCAGATATGGATTTTCAGGAAAGAGAGGATGACACAGTTGTGACAGTGAGATGTCCCTTAGATACTCACCCTGTTTCTGATGTTGTTAAAACTTTCAGGGAGCATCAAATTGTGGCTCAAGACACCAGTGTTTCCTCTACAGATGATAAAATCATTCATACATTCTCCATAAGAACTGAGGGAGGGGAGACTGCTGCCATACAGTTGAAAGAAAAGCTTGAAGCGGCCCTATCCAAAAATTGA 1515 0.4442 MMGEKFCVNEEDKGVLESVLGSEAVAFFISALSNNVFSSVVAPSAGVDSSLRQRLCQLVEGSKWNYAVFWQAAGLKSGGSALIWGDGHCSDPKGKRSGVGKEDEQEVRKMVLQKLDAWFGGSVSKEANYARLDGLSDLLMFYLSSVCYIFGFDSPCGPGTSFKSGKLIWASDAAGCLNQLESRSFLGKVAGLQTVVFVPLKSGVVELGSNEVVSEEQGFVEMVRAAFGESSPGQAKVFPKIFGHELSLGDTKSQSITISFSPKVEDDPGFTSDSFEVQALGVNHAYGNSSNGTLGDSSEGKMFPQLNQMMGGNFNAQARVPCLDLGNEDTSSIHADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITFITDLQMKIKVLEAEKNMINNKDQRLSLPDMDFQEREDDTVVTVRCPLDTHPVSDVVKTFREHQIVAQDTSVSSTDDKIIHTFSIRTEGGETAAIQLKEKLEAALSKN* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00732 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 421 IPR036638 GO:0046983
Lapu7g00732 504 Gene3D - 345 418 IPR036638 GO:0046983
Lapu7g00732 504 MobiDBLite consensus disorder prediction 330 357 - -
Lapu7g00732 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
Lapu7g00732 504 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 227 IPR025610 -
Lapu7g00732 504 PANTHER MYC 45 500 IPR045084 GO:0003700|GO:0006355
Lapu7g00732 504 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
Lapu7g00732 504 MobiDBLite consensus disorder prediction 326 357 - -
Lapu7g00732 504 FunFam Transcription factor bHLH13 345 419 - -
Lapu7g00732 504 Coils Coil 398 418 - -
Lapu7g00732 504 CDD bHLH_AtAIB_like 349 426 - -
Lapu7g00732 504 SMART finulus 358 407 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00732 Lapu-Chr7 8576906 8579220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00732 2 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 48.819 2.50e-157 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu7g00732 bHLH-MYC_N 3.7e-41 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00732 - - gmx:100782107 920.228