Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00724 ATGGCGACGGAAGAGCCTACTGTTGTTGTGGAACCCGCACCTGAGCCTGCTGCCACGGAGTCTCCGCCGGAGGAGAAGGAGGAGCCCAAATCTGAAACAAAGGCCAAGAAGTCAAAGGAACCCAAACCTAAGAAGGTTACCAGACCCCGTAACCCTCCAACTCATCCTTCCTACGAAGAGATGATTAAAGATGCAATTACCTCGCTGAAGGAGAAAACTGGTTCCAGTCAATATGCAATTGCGAAGTTCATTGAGGAGAAGCACAAGCAGCTCCCCTCTAACTTCAGGAAGCTTCTTTTGTACCACTTGAAGAAGCTTGTTGCTGCTGGAAAACTGGTCAAAGTCAAAGGCTCCTTCAAGCTTCCTCCTACCAGGCCTTCTGTCTCATCTTCCCCTGCCAAGAAGAAGAAGCCTGCAGCAGTTAAGCCCAAGCCCAAGCCCAAGCCTGCCGCCAAGGCCAAGGATGCCAAGACGGCTAAGTCAAAGGCACCTGCTAAGGCAAAGCCTGCTGCCAAGCCGAAGGCCAAAGCTCCGGCCAAGCCCAAGCCTGCTGCGAAGCCCAAGGCTGCTCCCAAGCCCAAGGCTCCAGCTGCCAAGCCCAAGGCCACTAAGCCAGCTGCCAAGCCCAAACCTGCTGCAACGAAGCCCAAGGCTGCTAAGCCTGTGGCAAAGCCCAAGGCTAAGCCCGTGAAGGCTGCCAGGACTTCAACTAGGACCTCACCAGGGAAGAAAGCCCCTGCCGCGAAGCCTGCACCGAAGAAAGTGGTGGCAGCAGCAAAGAAAACTCCAGTGAAGAGTGTAAAGTCGAAGAGTGTAAAATCTCCGGCGAAAAAGGCTGCTACCAAAAGAGGGGGTAGGAAGTGA 864 0.5428 MATEEPTVVVEPAPEPAATESPPEEKEEPKSETKAKKSKEPKPKKVTRPRNPPTHPSYEEMIKDAITSLKEKTGSSQYAIAKFIEEKHKQLPSNFRKLLLYHLKKLVAAGKLVKVKGSFKLPPTRPSVSSSPAKKKKPAAVKPKPKPKPAAKAKDAKTAKSKAPAKAKPAAKPKAKAPAKPKPAAKPKAAPKPKAPAAKPKATKPAAKPKPAATKPKAAKPVAKPKAKPVKAARTSTRTSPGKKAPAAKPAPKKVVAAAKKTPVKSVKSKSVKSPAKKAATKRGGRK* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00724 287 MobiDBLite consensus disorder prediction 1 59 - -
Lapu7g00724 287 PANTHER HISTONE H1 23 253 - -
Lapu7g00724 287 PRINTS Histone H5 signature 68 85 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu7g00724 287 PRINTS Histone H5 signature 147 161 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu7g00724 287 PRINTS Histone H5 signature 182 199 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu7g00724 287 PRINTS Histone H5 signature 41 62 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu7g00724 287 PRINTS Histone H5 signature 204 223 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu7g00724 287 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 54 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu7g00724 287 FunFam Histone H1 49 135 - -
Lapu7g00724 287 Pfam linker histone H1 and H5 family 55 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu7g00724 287 MobiDBLite consensus disorder prediction 148 162 - -
Lapu7g00724 287 CDD H15 52 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu7g00724 287 MobiDBLite consensus disorder prediction 271 287 - -
Lapu7g00724 287 SMART h15plus2 52 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu7g00724 287 MobiDBLite consensus disorder prediction 20 39 - -
Lapu7g00724 287 MobiDBLite consensus disorder prediction 167 181 - -
Lapu7g00724 287 SUPERFAMILY "Winged helix" DNA-binding domain 51 135 IPR036390 -
Lapu7g00724 287 Gene3D - 50 130 IPR036388 -
Lapu7g00724 287 MobiDBLite consensus disorder prediction 114 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00724 Lapu-Chr7 8468379 8472661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00724 56 123 Single Myb Histone (SMH) Gene Family AT1G72740 36.765 2.15e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00724 K11275 - gmx:100775944 172.94