Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00718 ATGACGATGAAGAGGCTGGTGAGAGTGAAGAGGGATGCGATTGCAGCATGCATGACTTGCCCGCTTTGCAACAAGTTCCTCAAAGAGGCCACTGCCATTTCTCTTTGCCTTCATACGTTTTGCAGGAAGTGCATTTATGATAAAATTACAGATGAAGAATTGGAAAATTGTCCAGTATGCAACATTGATTTGGGCATTGTTCCGCTGGAGAAAATGAGGCCAGATAACAGTTTGCAAGATTTAAGGAACAAAATTTTCCCTTTCAATAAAAGAAAGCAGAAGGCACCTGTAGCCATCCCCTCAGTACTATTACCAGCTAGGAGAAAGGAGAGATCACTTTCATCTTTGGTTGTCAGCACTCCAAGGGTATCTACACAGTCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCACTAGGCGTGCAGGGCTCCAGTTTCTCTGTTGAAAAGCTCATTAAAAAAGAAGAGGAATTACTGGAAGATCGCCAAGATAGTTCATGCTCACCTGACACTTCAAACAAGTCTGCAAAGAGTGCAGGACAGAGTTTGTCACCTTGTAAAAATAGCCAATCCATATGCAATAGAGGACCGCAGAATGGTGCTGAAACACAGGAAGCAAAATGGGATCTTTGGAAAACTTTGAATTATTTAGCAGAGGCTGCAAGTAGGAGCAAGTCTTTCAAGTCTAATGTGCAAGCGTCTAATGCTAAACCAGAATCCGTGAAAGTAACTGACAGTGATACTAAATTGCTGAAAGCAAAAATTAAGGAAAATAAGCGGAAGGCAAAAGTTGAAGATGAAAAGATAAGCACTGATCATGTCTCTCCAGATACAGCAAAACCCAACAAATTGCGAAGAGTTCGCCCAAAAAAGGAACCTGTATTTGGAGAATCTAGAATATCACCTCAGGCCGTTCTGGATGCTAATGACAATAATCTCTTATGGAATGATTCAATTTGGTTCTCCTTAGCAGCTTCTGAAAACCAGGAAGGAGATGCACCTTTACCCCAAATTCCTTCAAGTTATGTAAGAATAAAGGATGGAAGCATACCAGTGTCATTTATCCAAAAATTGTTAATGAAGAAACTGGGCCTGAAAAGTGAGGATGAGGTTGAGATTAAATGCATGGGACATCCTGTGCTTCCTTCACTACAGGTGCAGAATTTAGTTGAATTGTGGCTTGATACGGCATCTACAGGCCAAAGAATTCCTGCAACCATAGGATCCTCTGGGAAAGATTTTGTCATGATCCTAACCTATGGTCGGAAGGTCCTACACCCTTGA 1290 0.4155 MTMKRLVRVKRDAIAACMTCPLCNKFLKEATAISLCLHTFCRKCIYDKITDEELENCPVCNIDLGIVPLEKMRPDNSLQDLRNKIFPFNKRKQKAPVAIPSVLLPARRKERSLSSLVVSTPRVSTQSTMTGRRTKPTRKALGVQGSSFSVEKLIKKEEELLEDRQDSSCSPDTSNKSAKSAGQSLSPCKNSQSICNRGPQNGAETQEAKWDLWKTLNYLAEAASRSKSFKSNVQASNAKPESVKVTDSDTKLLKAKIKENKRKAKVEDEKISTDHVSPDTAKPNKLRRVRPKKEPVFGESRISPQAVLDANDNNLLWNDSIWFSLAASENQEGDAPLPQIPSSYVRIKDGSIPVSFIQKLLMKKLGLKSEDEVEIKCMGHPVLPSLQVQNLVELWLDTASTGQRIPATIGSSGKDFVMILTYGRKVLHP* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00718 429 MobiDBLite consensus disorder prediction 115 142 - -
Lapu7g00718 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 425 IPR044807 GO:0004842
Lapu7g00718 429 CDD RING-HC_PCGF 18 61 - -
Lapu7g00718 429 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Lapu7g00718 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 101 IPR013083 -
Lapu7g00718 429 SUPERFAMILY RING/U-box 15 85 - -
Lapu7g00718 429 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Lapu7g00718 429 MobiDBLite consensus disorder prediction 161 202 - -
Lapu7g00718 429 MobiDBLite consensus disorder prediction 266 295 - -
Lapu7g00718 429 MobiDBLite consensus disorder prediction 167 202 - -
Lapu7g00718 429 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Lapu7g00718 429 SMART ring_2 20 60 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00718 Lapu-Chr7 8369427 8374825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00718 1 348 C3H Transcription Factor Family AT2G30580 48.433 7.55e-95 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00718 K16277 - gmx:100778462 743.421