Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00710 ATGTACATGAAAGTTAGCATGGCGGGTGCACCTTATTTGAGGAAGATAGATCTCAAGGTTTACAAAAGCTACCCTGAACTTCTCAAGGCCTTGGCAAACATGTTCAAGTGCACATTTGGTGAATATTCAGAAAGGGAAGGATACAATGGATCTGAACATGCTCCAACTTACGAAGACAAAGATGGTGATTGGATGCTGGTTGGAGACGTTCCATGGCACATGTTTGTGTCATCCTGCAAGAGGCTGAGAATCATGAAGGGATCAGAAGCAAAGGGATTGGGTTGTTTTTGA 291 0.433 MYMKVSMAGAPYLRKIDLKVYKSYPELLKALANMFKCTFGEYSEREGYNGSEHAPTYEDKDGDWMLVGDVPWHMFVSSCKRLRIMKGSEAKGLGCF* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00710 96 ProSiteProfiles PB1 domain profile. 1 87 IPR000270 GO:0005515
Lapu7g00710 96 Gene3D - 1 96 - -
Lapu7g00710 96 FunFam Auxin-responsive protein 1 96 - -
Lapu7g00710 96 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 91 IPR003311 GO:0005634|GO:0006355
Lapu7g00710 96 Pfam AUX/IAA family 1 94 IPR033389 -
Lapu7g00710 96 SUPERFAMILY CAD & PB1 domains 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00710 Lapu-Chr7 8284402 8285909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00710 3 93 B3 DNA Binding Superfamily AT2G46530 38.462 2.96e-13 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lapu7g00710 AUX_IAA 2.5e-42 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00710 K14484 - gmx:100799875 194.126