Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00700 ATGGACGGTGACGACGACCCTTCAGCATTGGCATGGCATTGGGTCATTGAAGCCCTATCAGCCTGTAAAGAAATCTCGAATTCCACTTTGCAGGGTTTGCTTGATGCAGCACCTGTGGGGAATGATAAATTTGGTGAAAATACAAAGGAAATGGTTTCTTTGAGGTGTTTGGAGAAACTGTCAACTGGTGTGGCTGACCCTGTAGCTTCTTCTAGATTGGATTCCAGAGCTGGATTTGATTTTTCGCGGGGTTGTCAAGATGTCCTCCAGGAAATATTGGATGAGATCCCATTATCAAATCTGAAAATGACTGCAGCGGAGGTTTTGAAATCAAATGTTTACCCGATTATAAATCACAAAAGATCTGGCACTTTTAAATGCCACTTAGAGCAGCTGAGAGAAACAATCTTGGATGGTACTCATCCTCATACTGATTACTTGAAAGAAAGGAGTGGATTATTTCCTCAGAATAATGGTTATTCAGTGAATGTAAATGATGTCAAACGTGATGATCATTCAGCTAAGGAAGCTGGGAACTCCACCAATACAGAAAACATGGTAGGAAAAGATAACTCCGTGTTTTTAAGTTTAGAGAATGGGAATAAATCTTCAAAAGAACACCTGCTTGATAATAATTCTTCACCCTCCAAGAGGAGTAGGGTTTACTCAGCAGATGGTCATCTTATGAAACACTTTCATGGAAAGCAAGTCTGTCTAAATGAATGTGACGATTTTTTTAGAACTTCGAAGAGGGTTAAATTTTCTGCATCTACAAGTTTTGAGTCTAAGAAAGAGAAGCCAGTTTCTCAACTCAGTCAGGAAGTGTCAGAACATTTACCTGAGAGAATTCTTCTAGTTTCTGAACAAGGAGATCATCATGTAGAAAATAATAACAAGGAAGCTCTGGTTGGTGGGTCCTCAGAGGATATTCCCAATAGGTGCGCTGCTTCAAAATTGTGCCGCAGCCATATTGAAGTCCCCCATGATGAATCAAATATTCCTTTTAATGATGCTTTGATGCTTCAACATACATTTGGGGGTGAAAATTCGCGGAAATCACAGGTTGAGTCAATTCCACATGTTGCACTTGCAGATGAAATCCAGCATGAGATTTCCAGAAGTAAACCTAGGTCTAAACATGAAAAAGATTTTCAAGTTGAAGATCCAAATGACTCACAGAAGCAAATTGCTGGTGTTAAAGCTCCAGATCATACTGGGAATGGTTGTGGGGTAGAGAAATCAGGTGATATTGTGTATCAATGTGAAAAAATTAACCTTGAAATGAAAAAGCAGGCAGAACAAAATCTTTGTCTGAAGTGTAATGAAGGTGATCAATTACCAATTTGTGATGTAAATGTCATCCAACCTACTGAATGTTGTCTTGGTATGACAACTACCATTCCAACAAATGATGCTAATGCAGAAAAAAATCAGCAAACAATTAATCCGCACCAAGACAAACAGACAGAACCAGATATAAGAACTTTAAATATCTCCCAGGAGCCAGTTGCTTGTGATAAAACTATAGTTGGTGTAGTTGATGGTTGTGGAGCAGAGTTATCAAGTGATAGTGATGGATATCACAACGAAAAAAAATGTCTTGAAGCAAAAAAATATGAATTCCTTCGCTCCCACTGCATGGTTGATCGAGATTTATCAGCAATGACTGAATCATCTGAACAAAATCTTTGCATGAAGTGTAATCAAGGTGGCCAATTACTGGCTTGTAAAACAACTACTTGCCCATTGATGGTGCATGAAAGCTGTCTAGGTGCATCTGCACAATTGGATGCAAAGGGCGACTTCTTTTGCCCATTTTGTGCATATTCTCACACTATTTCAGAATATGTTGATGCTAAGAAAAAAGCTTCCTTGGCAAGGAAGGAATTAGCCATCTTTTTTAGTAAAGGTAAAATGAGTCAAGCTGCAGATAGTCTACTTTATGAATTTCATACGCAAGAACGTTGTTTTTCAAGAAAGAGTAGTGAATGTGAACATATTCTTGTCAAAAACAACAAAGATGAGCAGTTAACAAGGTGTGAAGACAATAGAGAAGATCATGTTGGTGAGCATGCAAATGAAGCCAATAATCTTCAGTTTGGAAGCAGTCAGCAACCCCCTATATCATGTATCCATTCATCAAGCAGAGAAAAGGAAAATGTAAGCAATGGATCAATTGAAATATTTAGAGAGGAGGAAATAGGAGAAATGCCAAATGCGAAGAACATAACTGGTTTAAGAGTTGAAGAAAATGAAGTGCCAACTGAAACATGTACTATTGAAAAAACAAATGTTGCCCTTGTTAATAAAAGCAATGCTGGATGTGAAAGTCCACAAGAAATGAGAAAACAGCAAGATATTGATGGAGCAATACAGCCAGTTTGTGCACATAATACTGGAAAAGAGGAAATTTCTGAAAATGAATATGAAAAGCATAGTATTTCTAGATACTCCATGAGATACCGTAAACATGAAATGCAATGCAAATCCCAGGCAAGCCCGGTATTTCTGGGTAATCAATTAAGACGAAAAAAAATTCCGTGGACAGCTGAGGAGGAAGAGATGATAAGGGAGGGAGTACAGAAGTTTGGTTTCAAATGGAAAAACATTTTGGCATTTGGTTCTCATGTGTTTGAGAAAGTTGGTAAGTATCGTACACCACAAGACCTGAGGGATAAATGGAAGAACATGTGCAAAGCTCACTCAAAATCAAAATGA 2718 0.3819 MDGDDDPSALAWHWVIEALSACKEISNSTLQGLLDAAPVGNDKFGENTKEMVSLRCLEKLSTGVADPVASSRLDSRAGFDFSRGCQDVLQEILDEIPLSNLKMTAAEVLKSNVYPIINHKRSGTFKCHLEQLRETILDGTHPHTDYLKERSGLFPQNNGYSVNVNDVKRDDHSAKEAGNSTNTENMVGKDNSVFLSLENGNKSSKEHLLDNNSSPSKRSRVYSADGHLMKHFHGKQVCLNECDDFFRTSKRVKFSASTSFESKKEKPVSQLSQEVSEHLPERILLVSEQGDHHVENNNKEALVGGSSEDIPNRCAASKLCRSHIEVPHDESNIPFNDALMLQHTFGGENSRKSQVESIPHVALADEIQHEISRSKPRSKHEKDFQVEDPNDSQKQIAGVKAPDHTGNGCGVEKSGDIVYQCEKINLEMKKQAEQNLCLKCNEGDQLPICDVNVIQPTECCLGMTTTIPTNDANAEKNQQTINPHQDKQTEPDIRTLNISQEPVACDKTIVGVVDGCGAELSSDSDGYHNEKKCLEAKKYEFLRSHCMVDRDLSAMTESSEQNLCMKCNQGGQLLACKTTTCPLMVHESCLGASAQLDAKGDFFCPFCAYSHTISEYVDAKKKASLARKELAIFFSKGKMSQAADSLLYEFHTQERCFSRKSSECEHILVKNNKDEQLTRCEDNREDHVGEHANEANNLQFGSSQQPPISCIHSSSREKENVSNGSIEIFREEEIGEMPNAKNITGLRVEENEVPTETCTIEKTNVALVNKSNAGCESPQEMRKQQDIDGAIQPVCAHNTGKEEISENEYEKHSISRYSMRYRKHEMQCKSQASPVFLGNQLRRKKIPWTAEEEEMIREGVQKFGFKWKNILAFGSHVFEKVGKYRTPQDLRDKWKNMCKAHSKSK* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00700 905 MobiDBLite consensus disorder prediction 369 389 - -
Lapu7g00700 905 SMART sant 844 900 IPR001005 -
Lapu7g00700 905 SUPERFAMILY FYVE/PHD zinc finger 557 611 IPR011011 -
Lapu7g00700 905 SMART PHD_3 563 608 IPR001965 -
Lapu7g00700 905 ProSiteProfiles Myb-like domain profile. 840 898 IPR001005 -
Lapu7g00700 905 MobiDBLite consensus disorder prediction 169 188 - -
Lapu7g00700 905 ProSitePatterns Zinc finger PHD-type signature. 564 607 IPR019786 -
Lapu7g00700 905 SUPERFAMILY Homeodomain-like 842 899 IPR009057 -
Lapu7g00700 905 ProSiteProfiles Zinc finger PHD-type profile. 561 610 IPR019787 -
Lapu7g00700 905 CDD SANT_TRF 846 899 - -
Lapu7g00700 905 MobiDBLite consensus disorder prediction 369 407 - -
Lapu7g00700 905 Pfam Myb-like DNA-binding domain 848 900 - -
Lapu7g00700 905 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 469 901 - -
Lapu7g00700 905 Gene3D - 839 901 - -
Lapu7g00700 905 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 842 902 IPR017930 -
Lapu7g00700 905 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 555 617 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00700 837 900 Single Myb Histone (SMH) Gene Family AT1G17520 46.154 1.33e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu7g00700 Myb_DNA-bind_6 5.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00700 - - ccaj:109810464 1184.86