Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00626 ATGTCAAATATTTCAGGTGATGAAGGAAGTTTCTCCTCAGCGAACACTGTGGAAGAAGTTCATCAAGAAAGCAAGCAGCAACAACCACAAAACCGGCATGGCTCAAGTTCTGGAGCTTGCAACAGCTATAGCTCAACTACTCAACAACAACAGCAACAGGCAACCAAGAAGAAAAGAAACTTACCTGGAACCCCAGATCCGAATGCTGAAGTTATTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTTTGTGAGATCTGCAAGAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCATGGAAACTGAGGCAAAGACCAAGCAACGAGGTGAAGAAACGGGTTTATGTGTGCCCTGAGCTCTCATGCGTCCACCATAACCCAGCTCGAGCATTAGGAGACCTCACTGGCATAAAAAAGCATTACAGCAGAAAACATGGTGAAAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATATGCAGTCCAATCTGATTGGAAGGCCCACCAGAAAACCTGTGGCACCAGGGAATACAAATGTGATTGCGGGACCATATTTTCCAGAAGAGACAGCTTTATCACACACAGGGCCTTTTGTGATGCATTAACTGAAGAAAACAACCGAGTAAACCATTCATTAACGAGTGGCACTAGCATGACACCAAGCTTGCAAAATGAAGACCTCATGGCCACAATGCCTCTGAGCACCAGTCCCAACAACGCAGTACCCGAATTCAACTACGACCCTAGTAAGAGCCCACTCCAAACCCTATCCCAAGAACATCTTGTCCCAATGCCATTCAAGTCCATGAGCATGAGGGGTGGCACGTCCTCTACCTCTTCAGGTACACTCTTTGGTGGTCCAAAAATGTCACTTCCTCAATCTTCCACCCTTCAACTCAGCTCCAACAACTCTCTTACTTTCAATTACTTCCAAGACAGCAAAAACGCTTCTGCGTCAGCTCACATGTCTGCCACTGCTTTATTACAGAAAGCAGCCCAAATGGGTGCCGCTGCAAGCAATAATAGCATTAACTCTCACACCATGATGCAGAAAAGCTTTGTTAGTGGCATGACTGGTCCTGACCCCCACCATAATCCTTCCTCCTATGACCCCTTCCATCATCCACACCCTGATGATCAATCTCACATGGCTGGGGTTAGTGGTGCTGGAGCCTTCACCAACCAATTTTTTCACAAGGAGCAACAACAAATGTCATTAATACTTGATTCGAACACTAACGATATGGGAATTTTCGGTGCAATGTTCATGGGAAGTGACCACAACCAAGGGGTGATGAAGAACATGGAACAAGAGGTTGGTGCTAGTAGTTTAAGTTTGATTCGAAGAAGAGATGTATCAGAAGGAAATCCAATGGGGGCTTCAAGGTTTGGAGGTGACATGACAACGGTCCATGATTTCTTGGGCGTCGGGGGTGCAACTTCAAGGGCAGGAAGTTTGCATGAACCACAGAAACAACAACAGCAAAGTTTGTTAGAAGCATTAACCCACCAGAGGTTACAAATGATTAATCACTTTCATCACCACCACCTTCCACATGGGGATTCTGCTGTGGAGAAGTCCATTTGGGACATTTGA 1629 0.4543 MSNISGDEGSFSSANTVEEVHQESKQQQPQNRHGSSSGACNSYSSTTQQQQQQATKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLRQRPSNEVKKRVYVCPELSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNHSLTSGTSMTPSLQNEDLMATMPLSTSPNNAVPEFNYDPSKSPLQTLSQEHLVPMPFKSMSMRGGTSSTSSGTLFGGPKMSLPQSSTLQLSSNNSLTFNYFQDSKNASASAHMSATALLQKAAQMGAAASNNSINSHTMMQKSFVSGMTGPDPHHNPSSYDPFHHPHPDDQSHMAGVSGAGAFTNQFFHKEQQQMSLILDSNTNDMGIFGAMFMGSDHNQGVMKNMEQEVGASSLSLIRRRDVSEGNPMGASRFGGDMTTVHDFLGVGGATSRAGSLHEPQKQQQQSLLEALTHQRLQMINHFHHHHLPHGDSAVEKSIWDI* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00626 542 SMART c2h2final6 161 181 IPR013087 -
Lapu7g00626 542 SMART c2h2final6 126 156 IPR013087 -
Lapu7g00626 542 SMART c2h2final6 85 107 IPR013087 -
Lapu7g00626 542 Pfam Zinc finger, C2H2 type 85 107 IPR013087 -
Lapu7g00626 542 FunFam protein indeterminate-domain 12-like 64 132 - -
Lapu7g00626 542 MobiDBLite consensus disorder prediction 1 59 - -
Lapu7g00626 542 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Lapu7g00626 542 Gene3D Classic Zinc Finger 81 108 - -
Lapu7g00626 542 Gene3D Classic Zinc Finger 140 219 - -
Lapu7g00626 542 FunFam protein indeterminate-domain 5, chloroplastic-like 139 218 - -
Lapu7g00626 542 MobiDBLite consensus disorder prediction 367 397 - -
Lapu7g00626 542 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 29 506 IPR031140 -
Lapu7g00626 542 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Lapu7g00626 542 MobiDBLite consensus disorder prediction 1 70 - -
Lapu7g00626 542 SUPERFAMILY beta-beta-alpha zinc fingers 84 182 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00626 Lapu-Chr7 7170223 7173501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00626 56 354 IDZ Gene Family AT3G50700 55.692 1.27e-114 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu7g00626 zf-C2H2 0.011 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00626 - - gmx:100797943 744.577