Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00625 ATGGGTGACAACATCAACATTGCCCAAGTCTTAGACAGAGAAGGCTTTAAGTACAACTTCACATCTTCCACTGCAACTGCAAGTGACACCTCTGCACAAGATGGGGTCATTAAGGAGCAAGATCGGTTGCTTCCAATAGCTAATGTGGGGAGGATCATGAAGCAAATCCTTCCCCCCAATGCCAAGATCTCAAAGGAAGCTAAAGAAACCATGCAGGAATGTGTGTCAGAGTTCATTAGCTTTGTCACTGGGGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAAACCGTGAATGGTGACGATATTTGCTGGGCCCTGGCTACCCTAGGGTTTGATGACTACGCTGAGCCTCTTAAAAGGTATTTGCATAAGTATAGGGAGTTGGAGGGGGAGAGAGCAAACCAAAATAAGGGTAACAGTTATGAAAACAACATTGCAAACATATAA 450 0.4489 MGDNINIAQVLDREGFKYNFTSSTATASDTSAQDGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHKYRELEGERANQNKGNSYENNIANI* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00625 149 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Lapu7g00625 149 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Lapu7g00625 149 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Lapu7g00625 149 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 43 107 IPR003958 -
Lapu7g00625 149 SUPERFAMILY Histone-fold 40 140 IPR009072 GO:0046982
Lapu7g00625 149 ProSitePatterns NF-YB/HAP3 subunit signature. 74 90 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lapu7g00625 149 Gene3D Histone, subunit A 31 148 IPR009072 GO:0046982
Lapu7g00625 149 FunFam Nuclear transcription factor Y subunit B-3 32 148 - -
Lapu7g00625 149 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 24 137 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00625 Lapu-Chr7 7152436 7152885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00625 18 137 CCAAT-HAP3 Transcription Factor Family AT2G47810 69.403 1.35e-63 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lapu7g00625 CBFD_NFYB_HMF 8.7e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00625 K08065 - gmx:100817274 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00625 7 7152436 7152885 Lapu7g00625 7 7152436 7152885 ECH
Lapu6g02300 6 22582850 22585350 Lapu7g00625 7 7152436 7152885 ECH
Lapu6g00483 6 5030346 5036388 Lapu7g00625 7 7152436 7152885 PCT