Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00579 ATGGCAAAAGCAAATGCCAAGAACAAATCCACCAATGCCCTCCACCCTCCCTACTTCCAGATGATCGCCGACGCAATAACGTCGTTGAAAGAACGCACGGGTTCGAGTCAGCCGGCCATAGCCAAGTTCGTCGAGGACAAGCACAGCAAAGTGCTTCCTCCCAACTTCCGGAAAGTTCTCTCCGTTCAGTTGAAAAATTTAGTCAAATCGGAGAAGCTCTACAAAGTCAAAAACTCTTACAAAATCTCTTCCCCGCAAACCGAAAAACCCAAAAGCGCTCCAAAAGAGAAGAAGGTGGCGGAGAAGACGAAGAGGCTGAGTCAGGTGAAGACGCCCGAAGCTCTTAAGAAGAAGGCCTCCAAGAAGAAGAAATATGTGGCTGCGGTGGCAGCCTCTGGAGGAGGGAAAGTGAAGAGTTTGAGTCAGGTGAAAACCCCCGAGGCCATGAAGAAGAAGCCCAATTTGACAACCGCCAAAAGCAAGAGCACTCCCAAACCTTCCAAGGCCAACAAGAAAGCTAGGAAATGA 528 0.4943 MAKANAKNKSTNALHPPYFQMIADAITSLKERTGSSQPAIAKFVEDKHSKVLPPNFRKVLSVQLKNLVKSEKLYKVKNSYKISSPQTEKPKSAPKEKKVAEKTKRLSQVKTPEALKKKASKKKKYVAAVAASGGGKVKSLSQVKTPEAMKKKPNLTTAKSKSTPKPSKANKKARK* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00579 175 PANTHER HISTONE H1 7 165 - -
Lapu7g00579 175 CDD H15 15 95 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu7g00579 175 PRINTS Histone H5 signature 28 45 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu7g00579 175 PRINTS Histone H5 signature 1 22 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu7g00579 175 PRINTS Histone H5 signature 142 159 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu7g00579 175 PRINTS Histone H5 signature 111 125 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu7g00579 175 PRINTS Histone H5 signature 164 175 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu7g00579 175 MobiDBLite consensus disorder prediction 78 175 - -
Lapu7g00579 175 Pfam linker histone H1 and H5 family 15 79 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu7g00579 175 Gene3D - 9 105 IPR036388 -
Lapu7g00579 175 SMART h15plus2 12 79 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu7g00579 175 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 14 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu7g00579 175 MobiDBLite consensus disorder prediction 90 115 - -
Lapu7g00579 175 SUPERFAMILY "Winged helix" DNA-binding domain 13 96 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00579 Lapu-Chr7 6587279 6588318 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00579 16 85 Single Myb Histone (SMH) Gene Family AT1G72740 40.000 3.50e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00579 K11275 - gmx:100306187 199.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00579 7 6587279 6588318 Lapu7g00579 7 6587279 6588318 ECH