Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00567 ATGGTTGGCCTGATGGGTGCACAGTTTTCTAAACCATTGGTGGCAAACAAGGTTACTCATCTAATATGCTATAAATTTGAAGGAGAGAAGTATGTGCTTGCCAAGAGATTGGGCACAATAAAGCTAGTTAATCATCGTTGGTTGGAAGATTGCTTGAAGGAATGGGTGCTTCTTCCTGAAGACAAATATAACAAGAGTGGTTTTGAACTAGAGATGGAGGAAGAGGCCAAGGATTCTGAGGAAGAGGTTGAAGATTCTAAGCTGGGACAATCAGGGGGGAGAAATATAAAACAAAGCCCCCTTAGTTCGAAATGTGGCCAAGCTGCAACTAATGGATTGTTGAAGTCAGTAATAGAGGCATCAAACGCCTTACCAGATTCTACTGGTCCACGGGTTTTGCCAAATGCCAATAATGGTGAAGAATCTTTAACCATTCCAGGAAACAAGAGAAAATCTGGTCAAGACTTTAGGTTTCATAATGTTGATGACTCAAAGATAAGTTATCAGACGCCAGATATTTCTAGATTATCTGAAAAATATATAAAGACCAGTGAGTCTAAGAATGCTGATTTTCCAAAGGCACCTGGCTGCCAGGACCCTGGCAATACGGCAAATACAAAATCATCTGGTCGGCAGTCCGGTCTACATGATAAAACCACGGAGTCTAAGAAGTTGATAAGTGACTTGACATCAACTTCTGCAAGTGCAGCTGGAATTGCACATTCAAATCAAAAGCTTAGAACTGCTAGTTATTCTAGAAAGAACCATGTGGAATTTTCTCTCCCAAGGATCTTAGATGGATCAGGCAGCAAATGTGAAAACGGTAAGGTTGACGAGTTTAGTGAGCTTATAAAATCTACCAGTGTTGAAATTTCTGGGAGAGGAAATGATTTTACTAAAGAGGATGAACCAATTAGTTTATTGCCTCAAAAGAGGATAAATGAAGCTTCTTTCACGAAATTAAAGTCAAGAAAGGTGTCTTCTGATGCAAAAATCTCCATCCAATCAGCAAATGGTAAATCTCAAGGATTAAAAGTGACATCTCAGGTTGATGAGCTACCCAAAGCTGATGACTATTTTTCTATGGGCAAAGATGGTATGAATAACTCAAACACTTGCTTAGTTTCAAAACCTGCTGGTTCTACCTCCAATTCACTGGCATTTGATGAGCATTTCTCAAGAAATGCAAGCCCGGAGTCTGCTCAGTGTGATCATGTCTATCAGAATAGTCCACAAACGGCTGTTCAGAGCTTAAGCGAGTATAAAATTAATTGCCAGCCTGATGTCACAAGTTCTGGAATGCGACAAGTTGGTGGTAATGAAACAGGGCAACATATCACTAAAAATATTGATTGTTCATCAACGGGAAACAGAAACTCACATAATGTGGAATCCGCTGGTTGTACTAATATGGATTTAAGCAATGAAGAACGTAATAAACTGGCTAGAAAATCACCCCGAAAGAAGTCAGTTGCCAAGAGAATTTCGGGTTCTAAACCAATAGTAGGGGCCACTGCTAGACATAAAAGATCACTTTCCTTGAATAAAACTATCCCGCAAGGTGAAGATGTAACTTTATCCAGTCCAAGCAAAGAAATTTGTGATGCGAAGATGCATCAGGGATGTCCCCAAATCCGTGATATTAACAATATGATGGAGCAAGAAGCAGTTAGTAAAAATACAGATGATGCTTGTGACAGAGCTGTTTTGACGGATGAAACCGAGGCTCCGGATGATAAATGTGAATTTGAGCTTGGAATGCCACTAAATGAAGAATCAGTTCGTCCTTCGGAAAAGCCAAGTGCAGCAACAGAAGAGAACTCAGAAGCAATTTACCCGGCAACAAAATGTGAAGAGGCAATGCCTCCTAAGAAAGGCACAAATAAAACAGAAAAACGGAAAACGTCTTCACTGGTAGTAAAGAATCAAGCAAGAAAACGTGCTGCTGGTAAAGCTAAGGCCACACTTAGTAAATACGCAGAAGATGCTGGTGACAAAACTGAGCCGGGTGACAGAACCGAGTTTTTGGATGATGAAACCGAAGCTCCAGATGATAAACTTGAAAATGAGTTAGGAATGGCACCTGAAGAAGAATTGTGTCATCCTTCAAAAAAGCCAGATACATCAACAGAAGAGAAGCCAGAAGAAATTTGCCCCGCGCCTAAAAGTGAAGAGGCGATGCCTCCTAAAAATAAAACTGAAAAACAGAAGCCATCTTCACTGGTAGTAAAGCATCAATCAAGAAAACGGCCTGCTGGTAAAGCCAAGGCCACAGTAGCCAAGGATTTAACGAAACCTGAAGTGGCAGTATCTAGGGAGAAGGTTCCTAACGAAACGGGGCACAAGCCAGAGATAGAAACCATGGAAGAAATGTCCTTTCCTGCCGATAAACGTGATAACTCAGCCATAGCAAGAAATAAATCAGAGAATTTGGTTGAAGAGAAGGAGAATAGACCAATTGATGCAGAGCAGGATCTGGTGACGGGCAGAAGCGATGGCAATCCAACTAATAAATCTAATGTAGGGCCAGCAAAGATAAAGTCTACTAAAGTGGAGCTCAATCCATCTGTATCAGAATCTAAGACGAGAGAAAAAACTGAAGCGGCATGTTTTATATTAAGCGGGCACCGCCTACAAAGAAAAGAATTTCAGCAAGTAATCCAGCGCTTAAAAGGAAGGGTTATCCAGGGTTCTCATAAGTGGTCATATGAGGCGACACACTTCATAGCTCCTGACCCCATACGCAGGACTGAGAAATTTTTTGCTGCGGCTGCATCAGGAAGGTGGATTCTGAAAACGGATTACTTAACTGCCATTAGTCAGGCAGGAAAATTCTTGGCGGAGGAGCCTTATGAATGGCACAATAATGGTCTCAGTGAGGATGGCGCAATCAATATGGAGGCTCCGAGAAAGTGGCGGCTATTTAAAGAAAGAACAGGTCGTGGCGCCTTCTATGGAATGCGTATTGTTGTATACGGAGATTGCATTGCTCCGCCCTTGGATACCCTGAAACGTGTCATCAAAGCTGGCGATGGAACAATCGTAGCAACTTCTCCTCCTTATACTCGCTTCCTTGGTACCGGAATCGACTATGCTGTAGTTAGCCCTGGCATGCCACGTGTTGATATGTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGTGTTGTAGCAGACTATTTGGTTGAGTATGTTTGCAAGCCCGGGTTCTCCCTCGAGAGACATGTATTATATGGCACTCATGCTTGGGCAGAGAGATCGTTTGATAAACTTAAAAGCAGGGCAGAAGAAGATGGAGATGATGATGCTGATTTAACTTGCAAAGTGTGTGGATCCGGGGAAAGAGGAGATGTAATGCTGATTTGTGGTGATGAAAGTGGTAGTGTTGGGTGTGGAGTGGGTACTCACATCGATTGCTGCGATCCTCCACTAACAGATATCCCTGAGGAAGATTGGTTTTGTCCAAAATGCAGTAGCATCCGAAACTCCTCAAACAATCCCACTAAAAGGAAAAAGAGTGTTTTATCTTCATCTAAGGCCTACTGA 3546 0.421 MVGLMGAQFSKPLVANKVTHLICYKFEGEKYVLAKRLGTIKLVNHRWLEDCLKEWVLLPEDKYNKSGFELEMEEEAKDSEEEVEDSKLGQSGGRNIKQSPLSSKCGQAATNGLLKSVIEASNALPDSTGPRVLPNANNGEESLTIPGNKRKSGQDFRFHNVDDSKISYQTPDISRLSEKYIKTSESKNADFPKAPGCQDPGNTANTKSSGRQSGLHDKTTESKKLISDLTSTSASAAGIAHSNQKLRTASYSRKNHVEFSLPRILDGSGSKCENGKVDEFSELIKSTSVEISGRGNDFTKEDEPISLLPQKRINEASFTKLKSRKVSSDAKISIQSANGKSQGLKVTSQVDELPKADDYFSMGKDGMNNSNTCLVSKPAGSTSNSLAFDEHFSRNASPESAQCDHVYQNSPQTAVQSLSEYKINCQPDVTSSGMRQVGGNETGQHITKNIDCSSTGNRNSHNVESAGCTNMDLSNEERNKLARKSPRKKSVAKRISGSKPIVGATARHKRSLSLNKTIPQGEDVTLSSPSKEICDAKMHQGCPQIRDINNMMEQEAVSKNTDDACDRAVLTDETEAPDDKCEFELGMPLNEESVRPSEKPSAATEENSEAIYPATKCEEAMPPKKGTNKTEKRKTSSLVVKNQARKRAAGKAKATLSKYAEDAGDKTEPGDRTEFLDDETEAPDDKLENELGMAPEEELCHPSKKPDTSTEEKPEEICPAPKSEEAMPPKNKTEKQKPSSLVVKHQSRKRPAGKAKATVAKDLTKPEVAVSREKVPNETGHKPEIETMEEMSFPADKRDNSAIARNKSENLVEEKENRPIDAEQDLVTGRSDGNPTNKSNVGPAKIKSTKVELNPSVSESKTREKTEAACFILSGHRLQRKEFQQVIQRLKGRVIQGSHKWSYEATHFIAPDPIRRTEKFFAAAASGRWILKTDYLTAISQAGKFLAEEPYEWHNNGLSEDGAINMEAPRKWRLFKERTGRGAFYGMRIVVYGDCIAPPLDTLKRVIKAGDGTIVATSPPYTRFLGTGIDYAVVSPGMPRVDMWVQEFLKHEIPCVVADYLVEYVCKPGFSLERHVLYGTHAWAERSFDKLKSRAEEDGDDDADLTCKVCGSGERGDVMLICGDESGSVGCGVGTHIDCCDPPLTDIPEEDWFCPKCSSIRNSSNNPTKRKKSVLSSSKAY* 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00567 1181 MobiDBLite consensus disorder prediction 658 673 - -
Lapu7g00567 1181 SUPERFAMILY BRCT domain 2 64 IPR036420 -
Lapu7g00567 1181 ProSiteProfiles BRCT domain profile. 1 65 IPR001357 -
Lapu7g00567 1181 ProSiteProfiles Zinc finger PHD-type profile. 1104 1160 IPR019787 -
Lapu7g00567 1181 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1173 IPR044254 -
Lapu7g00567 1181 CDD BRCT_TopBP1_rpt7 870 943 - -
Lapu7g00567 1181 MobiDBLite consensus disorder prediction 123 156 - -
Lapu7g00567 1181 MobiDBLite consensus disorder prediction 727 741 - -
Lapu7g00567 1181 MobiDBLite consensus disorder prediction 131 149 - -
Lapu7g00567 1181 MobiDBLite consensus disorder prediction 587 779 - -
Lapu7g00567 1181 MobiDBLite consensus disorder prediction 440 475 - -
Lapu7g00567 1181 SMART PHD_3 1106 1158 IPR001965 -
Lapu7g00567 1181 Pfam BRCA1 C Terminus (BRCT) domain 874 937 IPR001357 -
Lapu7g00567 1181 MobiDBLite consensus disorder prediction 440 496 - -
Lapu7g00567 1181 Gene3D BRCT domain 861 979 IPR036420 -
Lapu7g00567 1181 MobiDBLite consensus disorder prediction 686 720 - -
Lapu7g00567 1181 MobiDBLite consensus disorder prediction 184 221 - -
Lapu7g00567 1181 MobiDBLite consensus disorder prediction 793 861 - -
Lapu7g00567 1181 Gene3D BRCT domain 1 92 IPR036420 -
Lapu7g00567 1181 MobiDBLite consensus disorder prediction 72 104 - -
Lapu7g00567 1181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1091 1180 IPR013083 -
Lapu7g00567 1181 Gene3D BRCT domain 980 1081 IPR036420 -
Lapu7g00567 1181 Pfam PHD-finger 1107 1158 IPR019787 -
Lapu7g00567 1181 MobiDBLite consensus disorder prediction 622 638 - -
Lapu7g00567 1181 MobiDBLite consensus disorder prediction 793 825 - -
Lapu7g00567 1181 SUPERFAMILY FYVE/PHD zinc finger 1096 1161 IPR011011 -
Lapu7g00567 1181 MobiDBLite consensus disorder prediction 829 844 - -
Lapu7g00567 1181 SMART BRCT_7 981 1068 IPR001357 -
Lapu7g00567 1181 SMART BRCT_7 864 943 IPR001357 -
Lapu7g00567 1181 MobiDBLite consensus disorder prediction 199 213 - -
Lapu7g00567 1181 Pfam twin BRCT domain 2 47 IPR001357 -
Lapu7g00567 1181 ProSiteProfiles BRCT domain profile. 871 953 IPR001357 -
Lapu7g00567 1181 SUPERFAMILY BRCT domain 871 972 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00567 Lapu-Chr7 6426680 6433246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00567 803 1096 Core DNA Replication Machinery Family AT4G02110 57.285 1.46e-115 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu7g00567 BRCT 5.6e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00567 K10728 - gmx:100799144 1746.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00567 7 6426680 6433246 Lapu7g00567 7 6426680 6433246 ECH