Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00562 ATGGAGCTCCCTGTGATTGCAAGAAACATGGAAGAAGTAGTCTTGCTGGTTGATGATTTGAAATCGCTTTCTGGGATTTCTCGGTGTAGAATATGTCATGAAGAAGAATTTGAGAGCACCAAAACCTTGGAAGCTCCTTGTGCTTGTTCGGGGACAGTTAAGTTTGCTCACAGAGACTGCATTCAGACGTGGTGCAATGAGAAAGGAAACACAACTTGCGAAATATGTCTCCAGGAATACGAACCTGGATATACAGCAGTTCAGAAGAAATCGCAAATAGCTGATGCAGCAATGACCATTAGGGATAGCCTGCAAATTTCAATGAGTGAGCAAGAACCGTTAGACACAAGAATAGTGGGCATAGTTGAGGGAAACAATTACTCTGAATGCACGTATGCTGCGGATAGAAGCGCGGCTTGTTGTCGATCCCTGGCTTTAGCATTTACACTAATCTTGCTTGCAAGACATCTTTTTGCACTCCTTACAGATGGAATGGAAGATTATCCATTTACAATTCTTACGGTCTTTTTACTAAGGGCCAGTGGAATTATTATACCCATGTACATAATTATTAAGACGATCGGAGCCATACATAATAATATCAAGCGTTACCATCATCAGGATTCTGATGATGACTCATCGATATCAGATGGAGATGATGAAGAAAATGAGACACCAGATGATGCCATTTTAATACATTCACAATCATAG 711 0.4079 MELPVIARNMEEVVLLVDDLKSLSGISRCRICHEEEFESTKTLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQEYEPGYTAVQKKSQIADAAMTIRDSLQISMSEQEPLDTRIVGIVEGNNYSECTYAADRSAACCRSLALAFTLILLARHLFALLTDGMEDYPFTILTVFLLRASGIIIPMYIIIKTIGAIHNNIKRYHHQDSDDDSSISDGDDEENETPDDAILIHSQS* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00562 236 FunFam E3 ubiquitin-protein ligase MARCH4 18 86 - -
Lapu7g00562 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 87 IPR013083 -
Lapu7g00562 236 ProSiteProfiles Zinc finger RING-CH-type profile. 21 83 IPR011016 GO:0008270
Lapu7g00562 236 Pfam Protein of unknown function (DUF3675) 82 194 IPR022143 -
Lapu7g00562 236 Pfam RING-variant domain 29 76 IPR011016 GO:0008270
Lapu7g00562 236 SMART ringv_2 28 77 IPR011016 GO:0008270
Lapu7g00562 236 SUPERFAMILY RING/U-box 28 81 - -
Lapu7g00562 236 ProSiteProfiles Zinc finger RING-type profile. 29 76 IPR001841 -
Lapu7g00562 236 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 26 203 IPR033275 -
Lapu7g00562 236 CDD RING_CH-C4HC3_MARCH 29 76 - -
Lapu7g00562 236 MobiDBLite consensus disorder prediction 208 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00562 Lapu-Chr7 6373348 6375863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00562 29 76 C3H Transcription Factor Family AT2G37950 44.898 3.84e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00562 - - gmx:100797029 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00562 7 6373348 6375863 Lapu7g00562 7 6373348 6375863 ECH
Lapu6g00858 6 8782798 8785137 Lapu7g00562 7 6373348 6375863 PCT