Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00561 ATGGCAAGATTTTTTAGTTCAAGCCTTCACTCTACTACCAATGTCTCCTTCTCTGATATTAAGAGCAAGGTTGCTCCGTTATTGTTTCAAGCATTTGTGACGGTTCCATACTTGGCCCAAATCTCGTACATAGGGGTGGAAGGTCTCTTTTTCTCTTACTACACTGATAATGGTGAAGCTCTAGCTATGTATTCCAACTCATCGTCAAGTTGGGGTGCCTCCAATAAAACCTACATTCAACGCGTGAATCGTGAAACTGGAGAGGTTCATGGTGAAGCCACAAGCATAGTATCTAACCCCTTCATCAATGCAACTTGGATTGGCGAAGCACTTAATGTGTCAAGTGGGTTTTCCTCAATGGGAACCAAGTGGTCCAATAGTGATCTTCTGTTCCTCAGTTCAGCTAGAATCATGAGAAGAGGAGTGATCTCTCTTGGGTTTTCTGCAACGCCAATAACTGATTTTGTCACTCGTATTGATCAACAACATGGCACAAGGTCCTATTTAGCTACCAAAGATGGAAAAGTTGTTGTGGAAGGGATTCAACTTACCCATTTCGTCATTTCTAATGATACAGTTTTGTTCCAATCAGTTAATGCAAATGGTGATCACACAAGCAATGAGGGCACTGTCTCATGCAAGGATGAAGCTGCTACTTCTAGTTTCAATATTGGAGACACTGCGTATTCAATTCGCTGCTCCCCCATCGATATAATGGGAATAGAATCGGTGTATGTGTTGGCTGTCCCAAAAGAAGGGTATGTGAGAATTGATCAGAATTACAAGAAAAAGGGATTGATAGTGTTTGTGGCAACGATGGTCACTATATTTATTGCTTTCTTCAGTTTTCTATACGTAAACTGTAGAACCTTTAGGAGAGAAATGCATTTGTGTGCCTCACTCATCAAACAGTGTGAAGCCACCCAACAAGCTGAGAAAAAGAATATGAATAAGAGCATCGCTTTTGCAAGTGCTAGCCATGATGTTCGCGCTTCTCTAGCAGGCATCACCGGTTTGATAGAGATATCTTCAGAGTTGGTTGCCCCTGGTTCAGAATTGGAGATCAATTTGAAACAAATGAATGGTTGTACCCAAGACTTACTAGGACTGTTGAATTCTATACTAGACACAAGCAAAATAGAGGCAGGAAAAATGCAACTTGAAGAAGAGGAATTTGATGTGTTCCATCTCGTAGAAGATGTAGTTGACTTTTACCATCCTGTCGCTGCGAAGAAAGGTGTAGATGTTGTGTTGGACCCTTGTAATGGTTCTGTAGTGGGATATTCACATGTGAAAGGTGATAGGGGAAAACTAAAACAAGTTTTGTGTAATTTACTGAGCAATGCTGTGAAATTTACTGATGAGGGACATATAGCGGTACGTGCATGGACTCAGAAGCCAAGATTATTGCAAAACTCAACAGTCACTTGTAACCAATTTGGTTTCAAGAAATATTTATCATGCTTCTTTCGTAACAAAACTGAAGCATGTGACGTGGAATCCGTGCGTTCAATCCAAGAAGATCCGCATTCTATGGATTTTATAGTTGAAGTGGATGACACAGGAAAAGGAATTCCTAAAGAGAATTACAAGTCTGTGTTTGAGAATTACGTCCAAATAACAAATACTGCTCTTGGCCATGGGGGAACTGGCTTGGGACTTGGGATTGTGCAGTCGTTGGTGCGTTTGATGCATGGTGCTATTGAAATTGTGGAGAAGGATACGGGTGAAAAAGGGACATGCTTCAAGTTCAATGTGCTTCTCACTGTATGTGAGACTGAGGCACTGACAGATGGTAGCAGAAGGGAGGGTATTGGATGTGGATCAGGGGATAGAATGCAAGCTCAGGAGCAAACTATGCATGCTTCATGTTCTGGTTCTTCTAGAATTTGCTCCATGAGTCCTAGGTTATGTATTTGCAACTCTAGTCCTAAGCCTGAGGCTTCCCTTGCGGTTCTCTTGATTGTTGACGAGGAGCGCCAAAGGACTTCACAAAGGTTCATGGAGAGGTTAGGGATCAAAGTTAAAGTTGTGAATACAGGGAAACGTCTGTTTTATACTCTCAGGAAGATCAAGCTGAAGGCTAAGAATTCTAGTGGCCAAAATTCTCCAGGGTCTTCAGATTTGAGTTATTGGTCTACACCTCATAGTTCTGTTGACATAGCCACAAGAGTTTCTTTGAGTTCTATGGATGGAACTGATCACATGCCTTTGGTTTTCAAGAAAACTGATATTGGAGCTTCTCCCGGCTTCATCCTTATTGTGATTGATGCAAACGCAGGACCCTTTTCTGAGCTTTACACTATTGTATCCAACTTCAAGACAGACCTTCGCAACCCTTGTAAGGTTGTGTGGTTGGATAAGCCCTTCATGCGTAGAATCAACTTCAAGGCCCTTGATCAAGATGACATTGTCACATCCAAACCATTTCATGGTACTCGTTTGTTCCAAACCATAAAGCTCCTTCCCGAGTTTGGTGGTGCTTGGCAAAGCAATTCTAGTAGAGCTAAGAGGGAAATGACTAATGAGAGAGCTACGTTGAAGACTTACAAGGATCCAGGTTTGTCAAAATACACGTCTCCTCTACTAGACAGATCACAAGTGTCTTCAACTGATGAAAGTCCATTCCAAACTGCTGAAAAAATTAGGAAGGGAAAACGGCCATCCAAGGCAAAAATAACTCTTGTTCATAAAGGAGAAATACAAGAGATTGGAAACTCATCAGGATGTCACAAACCCTTGAGTGGTAAGAAGTTTTTGGTTGCTGATGACACTGCATTTTTGCGCAATATAGCTTCTGCTACTTTGATTTCTCTTGGTGCAACCATGGAGCTATGTGAGAATGGTGAGCAAGCTGTGAGGCTAGTTGATGAGGGTCTACATCGGGAGTTTCCTAATCCTCCTTATGATTACATCTTAATGGATTGTCAGATGCCAATAATGGACGGGCTTGAGGCAACAAAGTGGATACGAAAGATAGAGAAAGCATTTTGTGTTCACATTCCAATCATTGCATTGACTGCTGGAACTGAAAGAATAACGATAGAGAGTGGAATGGACTATCATATGGTGAAACCCATTAACAGAGAGGATTTACTTAAAGCCATCACATATATAAATGGTAAAGTGTGA 3132 0.4151 MARFFSSSLHSTTNVSFSDIKSKVAPLLFQAFVTVPYLAQISYIGVEGLFFSYYTDNGEALAMYSNSSSSWGASNKTYIQRVNRETGEVHGEATSIVSNPFINATWIGEALNVSSGFSSMGTKWSNSDLLFLSSARIMRRGVISLGFSATPITDFVTRIDQQHGTRSYLATKDGKVVVEGIQLTHFVISNDTVLFQSVNANGDHTSNEGTVSCKDEAATSSFNIGDTAYSIRCSPIDIMGIESVYVLAVPKEGYVRIDQNYKKKGLIVFVATMVTIFIAFFSFLYVNCRTFRREMHLCASLIKQCEATQQAEKKNMNKSIAFASASHDVRASLAGITGLIEISSELVAPGSELEINLKQMNGCTQDLLGLLNSILDTSKIEAGKMQLEEEEFDVFHLVEDVVDFYHPVAAKKGVDVVLDPCNGSVVGYSHVKGDRGKLKQVLCNLLSNAVKFTDEGHIAVRAWTQKPRLLQNSTVTCNQFGFKKYLSCFFRNKTEACDVESVRSIQEDPHSMDFIVEVDDTGKGIPKENYKSVFENYVQITNTALGHGGTGLGLGIVQSLVRLMHGAIEIVEKDTGEKGTCFKFNVLLTVCETEALTDGSRREGIGCGSGDRMQAQEQTMHASCSGSSRICSMSPRLCICNSSPKPEASLAVLLIVDEERQRTSQRFMERLGIKVKVVNTGKRLFYTLRKIKLKAKNSSGQNSPGSSDLSYWSTPHSSVDIATRVSLSSMDGTDHMPLVFKKTDIGASPGFILIVIDANAGPFSELYTIVSNFKTDLRNPCKVVWLDKPFMRRINFKALDQDDIVTSKPFHGTRLFQTIKLLPEFGGAWQSNSSRAKREMTNERATLKTYKDPGLSKYTSPLLDRSQVSSTDESPFQTAEKIRKGKRPSKAKITLVHKGEIQEIGNSSGCHKPLSGKKFLVADDTAFLRNIASATLISLGATMELCENGEQAVRLVDEGLHREFPNPPYDYILMDCQMPIMDGLEATKWIRKIEKAFCVHIPIIALTAGTERITIESGMDYHMVKPINREDLLKAITYINGKV* 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00561 1043 CDD REC_hyHK_CKI1_RcsC-like 919 1036 - -
Lapu7g00561 1043 PANTHER TWO-COMPONENT HISTIDINE KINASE 72 1037 - -
Lapu7g00561 1043 CDD HisKA 322 379 IPR003661 GO:0000155|GO:0007165
Lapu7g00561 1043 SUPERFAMILY CheY-like 914 1037 IPR011006 -
Lapu7g00561 1043 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 372 585 IPR036890 -
Lapu7g00561 1043 SMART HisKA_10 317 383 IPR003661 GO:0000155|GO:0007165
Lapu7g00561 1043 Gene3D - 304 384 - -
Lapu7g00561 1043 Gene3D - 898 1040 - -
Lapu7g00561 1043 ProSiteProfiles Response regulatory domain profile. 918 1040 IPR001789 GO:0000160
Lapu7g00561 1043 SMART REC_2 917 1036 IPR001789 GO:0000160
Lapu7g00561 1043 SMART HKATPase_4 433 590 IPR003594 -
Lapu7g00561 1043 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 433 588 IPR003594 -
Lapu7g00561 1043 PRINTS Bacterial sensor protein C-terminal signature 548 566 IPR004358 GO:0016310|GO:0016772
Lapu7g00561 1043 PRINTS Bacterial sensor protein C-terminal signature 514 528 IPR004358 GO:0016310|GO:0016772
Lapu7g00561 1043 Gene3D - 385 595 IPR036890 -
Lapu7g00561 1043 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 306 385 IPR036097 GO:0000155|GO:0007165
Lapu7g00561 1043 Pfam Response regulator receiver domain 920 1036 IPR001789 GO:0000160
Lapu7g00561 1043 ProSiteProfiles Histidine kinase domain profile. 324 590 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00561 Lapu-Chr7 6359505 6367156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00561 1 1029 Histidine Kinase Gene Family AT2G47430 41.066 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu7g00561 HATPase_c 8.7e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00561 - - var:108325233 1632.46