Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00550 ATGTCGCTGCTCGGCGTTTCCACCCCGTCATTCGGTAATGGTGGGTTAAAATGGTTGCTTATGTTGTTATCTTGCACGGTGTGGTTTGTGGTTGAGTATGGTGAATGCGGTAGAACACTGCAACAGGAAACACCTTCTTTATCTCCCGCTGCTGCTCCACCTGTTGTTGATGGTGATCTGCCACTTCTGGCAAATGCTCTTGGGTTGAAGCATTTGCCTGCACCTATTCCATCACGTGCCAATTTCACCAAAGGAAGAGCACAATTAGAACCTCCGGGTTCTGGGTTTAAGAATATTGCCCCTATGAATCCCATTGCTGATGCAATTCCTTCTGCTCTCGCTCAACCACCATTGTCCCCTTATGTTTCCGATTGTTGCAGACAAGACATGGTGTGGAAACGGGGCAGTGAAGTTTGTCACTGTGCTTATCCCATAAAGCTAGACTTGCTTCTTTTGAATGTCTCTCTAAACCCCGACTGGAATGTTGTTTTTCTCGATGATTTGGCCACCCAACTTCAGCTGAATACTGCCCAAATTGAAATTATTAAATTTTACCTACTGAGCTTGTCGACATTGAATATATCGATGGATATCACTCCAAAAAAAGGGATCAGTTTCTCGGCCAATGAAGCCGCTAAAATAAACTCATCGCTTTCATTGCATAAGGTTCAACTAGACAGCAGATTTGTGGGCAACTACAGTGTCCTCAATATAACCTGGTTTAAAGCTCCACCTCCTTCTCAAGCTCCTGCAATTGCTACATCACCTACGAAAGCTCCTCACAGACAAGCACCTCCAACTACATTATCGAGTACTTCAGACAGGGGAAGGCATTCAAACTTGCTTCTTATTCTTGGAATTGTGACTGGCGTACTCCTCATTTCCATTGTATGTGTACTTGTACTTTGCTTATGCACAATGCGGCCAAAAACAAAAACACCTCCCACAGAAACAGAAAAGCCAAGGACTGAAAGCACAGTTCCAGCTGTTGGGTCTCTTCCCCATCCAACAAGTACACGCTTTATTGCTTATGAAGAACTTAAAGAAGCTACAAATAATTTTGAACTAGCAAGCGTGCTTGGAGAAGGAGGTTTTGGTAGAGTTTTTAAAGGTGTCTTGAATGATGGAACTGCCGTTGCAATTAAGAGACTTACTAGTGGAGGGCAACAGGGTGACAAAGAATTTTTGGTTGAGGTTGAGATGCTTAGTCGGTTGCATCATCGTAACCTTGTAAAACTAGTGGGATACTATAGTAATCGTGACTCATCACAAAATCTACTTTGCTATGAGCTTGTCCCGAATGGAAGTTTGGAGGCCTGGCTTCATGGTCCCCTGGGAATAAATTGCCCTCTGGATTGGGACACTAGAATGAAGATTGCCCTTGATGCTGCAAGAGGACTTGCATACCTGCACGAAGATTCACAGCCTTGTGTTATACACAGAGATTTCAAGGCATCTAACATATTGCTTGAGAACAACTTTCATGCTAAAGTTGCAGATTTTGGTCTAGCTAAACAAGCACCTGAAGGCAGGGCTAATTATCTATCTACTAGGGTCATGGGCACATTTGGGTATGTAGCTCCTGAGTATGCTATGACTGGACATCTGCTTGTTAAAAGTGACGTTTATAGTTATGGGGTTGTCTTGTTGGAACTGTTGACCGGAAGGAAACCAGTGGATATGTCACAGCCAACTGGACAAGAGAACCTTGTTACTTGGGCAAGGCCTATTCTTAGAGATAAGGATCGGTTGGAAGAACTTGCTGATCCACGGCTTGGGGGAAGGTACCCAAAAGAAGATTTTGTACGTGTTTGCACTATTGCAGCAGCCTGTGTTGCTCCTGAAGCAAGCCAGCGACCTACAATGGGTGAAGTGTTACAGTCACTTAAAATGGTGCAGCGGATCACTGAAAGTCATGATCCTGTGTTAGCCTCATCCAATACCCGGCCCAACATGAGACAGTCCTCTACCACTTATGAGTCTGACGGAACTTCTTCAATGTTTTCTTCGGGTCCTTACTCTGGTCTAAGTGCCTTTGACCATGACAACATTTCGAGGACGGCTGTTTTCTCTGAAGATCTTCATGAAGGACGATGA 2097 0.4435 MSLLGVSTPSFGNGGLKWLLMLLSCTVWFVVEYGECGRTLQQETPSLSPAAAPPVVDGDLPLLANALGLKHLPAPIPSRANFTKGRAQLEPPGSGFKNIAPMNPIADAIPSALAQPPLSPYVSDCCRQDMVWKRGSEVCHCAYPIKLDLLLLNVSLNPDWNVVFLDDLATQLQLNTAQIEIIKFYLLSLSTLNISMDITPKKGISFSANEAAKINSSLSLHKVQLDSRFVGNYSVLNITWFKAPPPSQAPAIATSPTKAPHRQAPPTTLSSTSDRGRHSNLLLILGIVTGVLLISIVCVLVLCLCTMRPKTKTPPTETEKPRTESTVPAVGSLPHPTSTRFIAYEELKEATNNFELASVLGEGGFGRVFKGVLNDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVPNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPTGQENLVTWARPILRDKDRLEELADPRLGGRYPKEDFVRVCTIAAACVAPEASQRPTMGEVLQSLKMVQRITESHDPVLASSNTRPNMRQSSTTYESDGTSSMFSSGPYSGLSAFDHDNISRTAVFSEDLHEGR* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00550 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Lapu7g00550 698 FunFam Receptor-like serine/threonine-protein kinase ALE2 432 649 - -
Lapu7g00550 698 ProSiteProfiles Protein kinase domain profile. 354 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g00550 698 PANTHER OS01G0750732 PROTEIN 124 649 - -
Lapu7g00550 698 MobiDBLite consensus disorder prediction 260 275 - -
Lapu7g00550 698 MobiDBLite consensus disorder prediction 249 275 - -
Lapu7g00550 698 Gene3D Phosphorylase Kinase; domain 1 336 431 - -
Lapu7g00550 698 MobiDBLite consensus disorder prediction 311 331 - -
Lapu7g00550 698 MobiDBLite consensus disorder prediction 642 666 - -
Lapu7g00550 698 Gene3D Transferase(Phosphotransferase) domain 1 432 652 - -
Lapu7g00550 698 SUPERFAMILY Protein kinase-like (PK-like) 330 631 IPR011009 -
Lapu7g00550 698 CDD STKc_IRAK 360 630 - -
Lapu7g00550 698 Pfam Protein kinase domain 355 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g00550 698 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Lapu7g00550 698 FunFam Receptor-like serine/threonine-protein kinase ALE2 334 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00550 Lapu-Chr7 6233326 6239100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00550 20 698 Receptor kinase-like Gene Family AT4G02010 66.287 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Lapu7g00550 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00550 - - gmx:100792818 1184.09