Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00518 ATGCATATGGAATCTATCAATAAAGAGAGAAAAAAAAGGATACTAACCCCAAAAAAAAGAACAAAAATGAGTGGAAAAATACTCGGTCCCGCCGTTTCTCTCATCCTTGTGGTGGGTGTGGTCATTGGCGTGGTTGCTGTAGTTCAGAGCCCCAAGACCGTGACAAACAGTGCAGGAGAGCTAAAAACCACAAACAGGGCTGTGACAGCATTGTGCCAAAACTCAGACGACCCAAACTTGTGCCACGATGTGCTTTCCTCCTCAAACAGCTCAGACCCTAAGGATTACATTGCCACCGTGGTGAAAACCTCGATGGACAGTGTCATCAAAGCGTTCAACATGAGTGACAGGCTCACAGTGGAGCACGGCAACAGCAGCGAGGGAATGAAGATGGCTCTCGAGGATTGCAAGGATTTGTTGCAATCCGCGATCCACGAACTCGAGGCCTCAGGTGTGTTGGTCCGAGAGAGCAACATCCAGGACGTTCACGACCGCGCCGCCGAACTCAAGAACTGGTTAGGTGCTGTTGTTGCCTACCAGCAATCGTGCCTCGACGGCTTCAACACCGACGGTGAGAAGAAGGTTCAGGAACAGCTGCAGGCCGATAGCTTGGACAACGTTGGAAAGCTCACTGGATTGGCACTGGATGTCGTTTCAGGGATTTCAAAGATTCTTCAATCCATGGACTTGAGCTTGGCTTTGAAACCCTCCTCTCGTCGCCTTCTTGAGGTTGATCAAGACGGGTACCCAACTTGGCTCTCCACTGCTGATCGCAAGCTCTTGGCTACCCCCAACGGTGGAGTTATTCCCCATGCTACAGTGGCTAAGGATGGTAGTGGCCAATTCACTACCGTTTTGGACGCCATCAACTCCTACCCCAAGAATCACCAAGGTCGATTCATCATCTACGTCAAGGCTGGTGTCTATGACGAATACATTGTTGTTGACAATGAGAAGGTGAATCTTCTCATCTATGGCGATGGCCCCACCAAGACCATCATCACCGGACGCAAAAACTTCGCCGAGGGTACCAAGACAATGAGAACTTCTACCTTCTCCACTATTGCTGATGATTTCATGGCAAAGTCAATTGCATTCGAGAACACTGCTGGAGCAAAAGGACACCAAGCAGTGGCTCTTCGCGTGCAGGGTGATCGTTCAGTATTCTTCGATTGCGCAATGCGCGGTTACCAAGACACATTGTATGCACACGCCCACCGTCAGTTCTACCGCAACTGCGAAATCTCTGGAACAATCGACTTCATCTTCGGCTACGCCACCACCTTGATCCAGAACTCGAAGATCTACGTGAGGAAGCCCGAGGCAAACCAACAGAACATAGTGGTGGCAGATGGAACTGAACAGAAGAACATGCCCACTGGAACAGTCCTCCAGAACTGTGAGATCATGCCCGACCCTTCACTCTTCGCTGATCGCTTGACAGTGAAGACATACCTGGCCAGGCCATGGAAGGCATTCTCCAGAGCAGTGTTCATTGAGAATGTGATCGGTGACTTGATCCAGCCGGAGGGATACATTCCATGGAACCCCGTTGAGCCCAACACCAAAGACTGTTACTTCGCTGAGTTTGGCAACAGTGGACCTGGCTCCGTTGCCAACGCAAGGGCACCCTTTAGCAAAGGTCTGATCAGCAAGGAAGAGGCTGCCAAATACACCGCTGGGCCCTGGCTCCAAGCTAGCACCTGGTTGCCTGCCACCGGCATTCCTTTTGACGCCACCTTCACCAAAGCTTAA 1755 0.51 MHMESINKERKKRILTPKKRTKMSGKILGPAVSLILVVGVVIGVVAVVQSPKTVTNSAGELKTTNRAVTALCQNSDDPNLCHDVLSSSNSSDPKDYIATVVKTSMDSVIKAFNMSDRLTVEHGNSSEGMKMALEDCKDLLQSAIHELEASGVLVRESNIQDVHDRAAELKNWLGAVVAYQQSCLDGFNTDGEKKVQEQLQADSLDNVGKLTGLALDVVSGISKILQSMDLSLALKPSSRRLLEVDQDGYPTWLSTADRKLLATPNGGVIPHATVAKDGSGQFTTVLDAINSYPKNHQGRFIIYVKAGVYDEYIVVDNEKVNLLIYGDGPTKTIITGRKNFAEGTKTMRTSTFSTIADDFMAKSIAFENTAGAKGHQAVALRVQGDRSVFFDCAMRGYQDTLYAHAHRQFYRNCEISGTIDFIFGYATTLIQNSKIYVRKPEANQQNIVVADGTEQKNMPTGTVLQNCEIMPDPSLFADRLTVKTYLARPWKAFSRAVFIENVIGDLIQPEGYIPWNPVEPNTKDCYFAEFGNSGPGSVANARAPFSKGLISKEEAAKYTAGPWLQASTWLPATGIPFDATFTKA* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00518 584 Pfam Plant invertase/pectin methylesterase inhibitor 67 216 IPR006501 GO:0004857
Lapu7g00518 584 PANTHER PECTINESTERASE 41 571 - -
Lapu7g00518 584 FunFam Pectinesterase 4 268 581 - -
Lapu7g00518 584 FunFam Pectinesterase 64 222 - -
Lapu7g00518 584 Pfam Pectinesterase 272 566 IPR000070 GO:0030599|GO:0042545
Lapu7g00518 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 220 IPR035513 -
Lapu7g00518 584 NCBIfam pectinesterase inhibitor domain 46 216 IPR006501 GO:0004857
Lapu7g00518 584 SMART PMEI_2 63 217 IPR006501 GO:0004857
Lapu7g00518 584 Gene3D - 268 583 IPR012334 -
Lapu7g00518 584 CDD PMEI-like_3 70 223 - -
Lapu7g00518 584 SUPERFAMILY Pectin lyase-like 272 579 IPR011050 -
Lapu7g00518 584 ProSitePatterns Pectinesterase signature 2. 415 424 IPR033131 -
Lapu7g00518 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 62 222 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00518 Lapu-Chr7 5837945 5851206 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00518 23 576 Carbohydrate Esterase AT2G47030 39.394 2.16e-129 390