Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00516 ATGAGTGGAAAAATAATCGGTCCCGCCGTTTCTCTCGTCCTTGTGGTGGGTGTGGTCATTGGCGTGGTTGCTGTAGTTCAGAGCCCCAAGACCGCGACAAACAGTGCTGGAGAGCTAAAAACCACCAACAGGGCTGTGACAGCATTGTGCCAAAACTCAGACGACCAAAACCTGTGCCACAATGTGCTTTCCTCCTCAAACAGCTCAGACCCTAAGGATTACATTGCCACCGTGGTGAAAACCTCGATGGACAGTGTCATCAAAGCGTTCAACATGAGCGACAGGCTCACAGTGGAGCACGGCAACAGCAGCGAGGGAATGAAGATGGCTCTCGAGGATTGCAAGGATTTGTTGCAATCCGCGATCCACGAACTCGAGGCCTCAGGTGTGTTGGTCCAAGAGAGCAACATCCAGGACGTTAACGACCACGCTGCCGAACTCAAGAACTGGTTAGGTGCTGTTGTTGCCTACCAGCAATCGTGCCTCGACGGCTTCAACACCGACGGTGAGAAGAAGGTTCAGGAACAGTTGCAGGCCGATAGCTTGGACAACGTTGGAAAGCTCACTGGATTGGCACTGGATGTCGTGTCAGGGATTTCAAAGATTCTTCAATCCATGGACTTGGACTTGGCTTTGAAACCCTCCTCTCGTCGCCTTCTTGAGGTTGATCAAGACGGGTACCCAATTTGGCTCTCCGCTGCTGATCGCAAGCTCTTGGCTGCCCCCAACAGTGTTATTCCCCATGCTACAGTGGCTAAGGATGGCAGTGGCCAATTCAAGACCGTTTTGGACGCCATCAACTCCTACCCCAAGAATCACCAAGGTCGATTCATCATCTACGTCAAGGCTGGTGTCTATGACGAGTACATCGTTGTTGACAAGAAGAAGGTGAACCTTCTCATCTATGGTGATGGCCCCACCAAGACCATAATCACCGGACGCAAAAACTTCGCCGAGGGTACAAAGACAATGAGAACATCTACCTTCTCCACCGTTGCTGATGATTTCATGGCAAAGTCAATTGCATTCGAGAACACCGCTGGAGCAAAAGGACACCAAGCAGTGGCTCTTCGCGTGCAGGGTGATCGTTCAGTCTTCTTCGATTGCGCCATGCGCGGTTACCAAGACACATTGTATGCACACGCCCACCGTCAGTTCTACCGCAACTGCGAAATCTCTGGAACAATCGATTTCATCTTCGGCTACGCCACCACCTTGATCCAGAACTCGAAGATCTACGTGAGGAAGCCCGACGCAAACCAACAGAACATAGTGGTGGCAGATGGAAGAGAACAGAAGAACATGCCCACAGGAACAGTCCTCCAGAACTGTGAGATCTTGCCCGACCCTTCACTCTCCGCTGATCGCTTGACAGTGAAGACATACCTGGCCAGGCCATGGAAGGCATTCTCCAGGGCAGTGTTCATTGAGAATGTGATCGGTGACTTGATCCAACCGGAGGGATACATTCAATGGAACCCCGTTGAGCCCAACACCAAAGACTGTTACTTCGCTGAGTTTGGCAACAGTGGACCTGGCTCCGTTGCCAATGCAAGGGCACCCTTTGGCAAAGGGCTGATCAGCAAGGAAGAGGCTGCCCAATATACCGCTGAGCCATGGCTCCAAGCTAGCACCTGGTTGCCTGCCACTGGCATTCCTTTTGACGCCAGCTTCACCAAAGCTTAA 1686 0.5196 MSGKIIGPAVSLVLVVGVVIGVVAVVQSPKTATNSAGELKTTNRAVTALCQNSDDQNLCHNVLSSSNSSDPKDYIATVVKTSMDSVIKAFNMSDRLTVEHGNSSEGMKMALEDCKDLLQSAIHELEASGVLVQESNIQDVNDHAAELKNWLGAVVAYQQSCLDGFNTDGEKKVQEQLQADSLDNVGKLTGLALDVVSGISKILQSMDLDLALKPSSRRLLEVDQDGYPIWLSAADRKLLAAPNSVIPHATVAKDGSGQFKTVLDAINSYPKNHQGRFIIYVKAGVYDEYIVVDKKKVNLLIYGDGPTKTIITGRKNFAEGTKTMRTSTFSTVADDFMAKSIAFENTAGAKGHQAVALRVQGDRSVFFDCAMRGYQDTLYAHAHRQFYRNCEISGTIDFIFGYATTLIQNSKIYVRKPDANQQNIVVADGREQKNMPTGTVLQNCEILPDPSLSADRLTVKTYLARPWKAFSRAVFIENVIGDLIQPEGYIQWNPVEPNTKDCYFAEFGNSGPGSVANARAPFGKGLISKEEAAQYTAEPWLQASTWLPATGIPFDASFTKA* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00516 561 FunFam Pectinesterase 42 200 - -
Lapu7g00516 561 PANTHER PECTINESTERASE 19 548 - -
Lapu7g00516 561 CDD PMEI-like_3 48 201 - -
Lapu7g00516 561 SMART PMEI_2 41 195 IPR006501 GO:0004857
Lapu7g00516 561 SUPERFAMILY Pectin lyase-like 249 555 IPR011050 -
Lapu7g00516 561 Gene3D - 245 560 IPR012334 -
Lapu7g00516 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 200 IPR035513 -
Lapu7g00516 561 Pfam Plant invertase/pectin methylesterase inhibitor 45 194 IPR006501 GO:0004857
Lapu7g00516 561 NCBIfam pectinesterase inhibitor domain 21 194 IPR006501 GO:0004857
Lapu7g00516 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 198 IPR035513 -
Lapu7g00516 561 Pfam Pectinesterase 249 543 IPR000070 GO:0030599|GO:0042545
Lapu7g00516 561 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Lapu7g00516 561 FunFam Pectinesterase 242 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00516 Lapu-Chr7 5824632 5826428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00516 1 553 Carbohydrate Esterase AT2G47030 39.430 8.64e-132 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00516 K01051 - gmx:100808559 959.903