Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00513 ATGCAGGTTTGTCTTAAATTTGTATACTTGGCACTAGGATCTGGAATAGGAGCCATTCTACAGGTGACATGTTGGACGGTGACAGGGGAGAGGCAGAGTGCTCGAATAAGGGGACTGTATCTGAAAACTATTCTGAGACAAGATATTGCTTTCTTTGATAAGGAAACAAACACTGGAGAGGTTATAGAGAGGATGTCAGATGACATCATTCTCATACAAGATGCCATGGGTGAGAAGGTTGGGAGATTTCTGCAGCTTATAACAATATTCACTGGGGGATTTCTGATAGCTTCTGTCAAAGGGTGGCTTCTTACTCTTGTCATGCTGTCCACTCTTCCACTTCTTGTTTTGTCAGGTGCTGCTATGGCCTTCACCATAGAAAGAACTGCTTCTAGACGTCAAACAGCTTATGCAAAAGCTGCACGTGTAGTTGAACAGACAATTGCCTCAATAAGAACCGTTGCATCCTTTACTGGGGAGAAACAAGCAATATCTAGTTATAACAAAGATCTTGCGCATGCTTACAAATCAGGACTTCAAGAAGGTTGCATTCATGGAGTCGGTGCAGGCACATTTTTGTTTGTTACTTTCGGTACTTTTGCCATAGGTGTATGGTTTGGAGCAAAGTTGATAATGGAAAAAGGATATAGTGGGGGCACGGTGATGAATGTGATTGTTGCCATACTTATTGGTTCATCGTCTCTTGGACAGACATCCCCTTGCATTAATGCTTTTGCTTTAGGTCAGGCTGCAGCATACAAAATGTTCCAGACAATTGAAAGGAAGCCAGAGATTGACGCTTATGATCCAAATGGAAAAGTATTGCTAGATATTCAAGGCGAAATAGAGTTAAGGGGTGTTTATTTCAGTTACCCATCAAGACCAGAAGAACTGATATTCGACGGATTCTCTCTTCATATACCAAGTGGTACAACTGCAGCGTTAGTTGGAGAAAGTGGAAGTGGAAAGTCTACAGTTATCAGCTTGGTAGAAAGATTCTATGATCCACAGGCTGGTGAAGTTCTTATTGATGGTATTAACCTGAAAGAATTTCAGCTAAGGTGGATCAGAGGAAAGATAGGCCTTGTCAGCCAGGAGCCGGTGTTGTTTGCATCTAACATTATGGATAATATTGCATATGGAAAAGAAGGTGCAACAATTGAAGAGATAAGATCTGCAGCTGAACTTGCAAATGCTGCTAAATTCATCGATAAGCTTCCACAGGGATTGAGCACAATGGTTGGTGCTCATGGAAGCAAGCTATCTGGTGGGCAGAAGCAACGCATTGCCATTGCAAGAGCAATCCTGAAAAATCCGCGAATTCTACTTCTGGATGAAGCCACAAGTGCACTTGATGCAGAATCAGAAAGAATGGTGCAAGAGGCTCTAAACAGGATCATGGTCAACAGAACTACTATTGTGGTGGCGCATCGCTTGAGCACAGTGAAGAATGCTGATACGATTGCTGTCATTCATAGAGGGAAAATGATTGAGAAAGGAACACACTCGGAATTACTAAATGATGATGGAGCTTACTCTCAACTTATACGCCTGCAAGAAAGAAGCTATGAATCAGAAAAAAATGCAGAGCATGACAGCAAGAGTGAAATTTCTGCAGAATCCTTTGGACAATCTAGTCAAAGGAGATCACTTAAAAGGTCCATGAGTAGGGGTTCATCCAAAGGAAACAGTAGCAACCCCTCATCTTCGGTTTCCTTTGGTTTATCCAAAGGAGTTAACGTCCCTCCTCCTGAACTCGAAAACTCACAACCCAAAGAACAAGCACCAGAGGTTCCACTCAGCCGCCTTGCTTCCCTCAATAAGCCAGAGATTCCTGTTCTTCTAATTGGATGTGTGGCTGCCATAGCAAATGGTCTTGTATATCCAATACATGGGTTGCTGATTTCCACTGCCATAAAGACATTTTATGAACCATTTGATGAGATGAAAAAAGATTCCAAGTTTTGGGCACTGATGTATACTACCCTTGGTATTGCAGCATTTCTGACAAATGTTGGACAAAGATACTTTTTTTCTGTGGCAGGATGCAAGTTAATCCACCGTATCAGGCTGATGTGTTTTGAGAAGGTTCTCAACATGGAGGTTGGTTGGTTTGATGAACCTGGAAACTCAAGTGGTGCCATCGGTGCCAGACTCTTGGCAGATGCGGCTTTTGTACGTGCCCTTTTTGGTGATGCGCTGGGAATATTTGTTCAAAATTTAGCATCTGCATTGGCAGGTTTGGTTATTGCTTTCATTGCATCTTGGCAGATGACGTTAGTTATTATTGTCCTGGTTCCACTTTTTGGATTAAATTTCTATGTTAACGTGAAACTCTTGAAGGGATTCAGTGCAGATGTAAAGATGATGTATGAGGATGCAAGCCAAGTTGCTAATGATGCAGTTAGAAGCATAAGAACAGTTGCTTCTTTTTGCGCTGAAGACAAGGTTGTGGAACTATACAAGAAAAAGTGTGAGGACCCCATCAAAGCAGGGATACGAGGAGCATTTATCAACGGATCAGGGTTTGGGGTTGCGCTTTTCTCATTGCTTAGTTTTTATGCAACCGGTTTCTACGCAGGAGCTAGACTTGTGGACGCTGGGAAGGCGTCATTCGCTGATGTTTTCAGGGTTTTCTTTGCATTAACTATGGCAACTGCTGGAATTTCCCAATCAAGCTCCCTAGCTTCTGACTCTAGCAAAGCCAAGGCAGCCACTGCTTCCATATTTAGAATGTTTGATAAGAAGTCAAAAATAGATCCGAGTGATGAGTCTGGCATCACACTGAATAGCGTCAAGGGAGAAATTGAGCTTCGTCATGTGAGCTTCAAGTATCCATCTAGGCCTGACATACTCATTTTCCAAGACCTCAGCTTGGCTATCCATTCTGGCAAGACTGTGGCTCTTGTTGGTGAAAGTGGAAGTGGGAAATCCACAGTGATTGCCTTGTTGCAAAGATTTTATGATCCTGATTCAGGGCAAATCACACTTGATGGTGTGGAGATTCGTGAGTTACAACTCAAGTGGTTAAGACAGCAGATGGGCCTTGTAAGCCAAGAGCCAGTTTTGTTGAATGAAACAATACGTGCCAATATTGCCTATGGAAAAGAAGGCAATGCCACTGAAGCAGAAATCATAGCTGCAGCAGAATTGGCCAATGCACATACATACATCAGTGCCCTACAACAGGGTTATGATACTTCAGTGGGGGAGAGAGGAACCCAATTATCTGGTGGACAGAAGCAACGGGTAGCCATTGCACGAGCCATAATAAAAAGTCCAAAGATATTACTCCTTGATGAGGCCACGAGTGCATTAGATGCAGAGTCAGAAAGAGTTGTTCAAGATGCATTGGACAAAGTGATGGCGAACAGAACCACTGTGGTTGTGGCACATCGTCTATCCACGATAAAAAATGCAGATGTGATTGCTGTTGTAAAAAATGGAGTTATAGTAGAGAAAGGAAAACATGAAACACTCGTTAACGTCAGCGGTGGATTTTATGCTTCCTTAGTCCAACTCCAGACAAGTGCTTCAAGAGGTTGA 3546 0.4275 MQVCLKFVYLALGSGIGAILQVTCWTVTGERQSARIRGLYLKTILRQDIAFFDKETNTGEVIERMSDDIILIQDAMGEKVGRFLQLITIFTGGFLIASVKGWLLTLVMLSTLPLLVLSGAAMAFTIERTASRRQTAYAKAARVVEQTIASIRTVASFTGEKQAISSYNKDLAHAYKSGLQEGCIHGVGAGTFLFVTFGTFAIGVWFGAKLIMEKGYSGGTVMNVIVAILIGSSSLGQTSPCINAFALGQAAAYKMFQTIERKPEIDAYDPNGKVLLDIQGEIELRGVYFSYPSRPEELIFDGFSLHIPSGTTAALVGESGSGKSTVISLVERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASNIMDNIAYGKEGATIEEIRSAAELANAAKFIDKLPQGLSTMVGAHGSKLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERMVQEALNRIMVNRTTIVVAHRLSTVKNADTIAVIHRGKMIEKGTHSELLNDDGAYSQLIRLQERSYESEKNAEHDSKSEISAESFGQSSQRRSLKRSMSRGSSKGNSSNPSSSVSFGLSKGVNVPPPELENSQPKEQAPEVPLSRLASLNKPEIPVLLIGCVAAIANGLVYPIHGLLISTAIKTFYEPFDEMKKDSKFWALMYTTLGIAAFLTNVGQRYFFSVAGCKLIHRIRLMCFEKVLNMEVGWFDEPGNSSGAIGARLLADAAFVRALFGDALGIFVQNLASALAGLVIAFIASWQMTLVIIVLVPLFGLNFYVNVKLLKGFSADVKMMYEDASQVANDAVRSIRTVASFCAEDKVVELYKKKCEDPIKAGIRGAFINGSGFGVALFSLLSFYATGFYAGARLVDAGKASFADVFRVFFALTMATAGISQSSSLASDSSKAKAATASIFRMFDKKSKIDPSDESGITLNSVKGEIELRHVSFKYPSRPDILIFQDLSLAIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGQITLDGVEIRELQLKWLRQQMGLVSQEPVLLNETIRANIAYGKEGNATEAEIIAAAELANAHTYISALQQGYDTSVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMANRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGKHETLVNVSGGFYASLVQLQTSASRG* 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00513 1181 MobiDBLite consensus disorder prediction 523 537 - -
Lapu7g00513 1181 SUPERFAMILY ABC transporter transmembrane region 602 920 IPR036640 GO:0005524|GO:0016020
Lapu7g00513 1181 FunFam ABC transporter B family member 1 926 1176 - -
Lapu7g00513 1181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 519 IPR027417 -
Lapu7g00513 1181 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 615 901 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu7g00513 1181 SUPERFAMILY ABC transporter transmembrane region 3 266 IPR036640 GO:0005524|GO:0016020
Lapu7g00513 1181 Pfam ABC transporter transmembrane region 614 884 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu7g00513 1181 Pfam ABC transporter transmembrane region 4 232 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu7g00513 1181 Gene3D ABC transporter type 1, transmembrane domain 3 529 IPR036640 GO:0005524|GO:0016020
Lapu7g00513 1181 CDD ABC_MTABC3_MDL1_MDL2 282 519 - -
Lapu7g00513 1181 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 936 1173 IPR003439 GO:0005524
Lapu7g00513 1181 FunFam ABC transporter B family member 1 594 902 - -
Lapu7g00513 1181 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 282 518 IPR003439 GO:0005524
Lapu7g00513 1181 PANTHER ABC TRANSPORTER B FAMILY 2 520 IPR039421 -
Lapu7g00513 1181 MobiDBLite consensus disorder prediction 523 597 - -
Lapu7g00513 1181 FunFam ABC transporter B family member 1 272 520 - -
Lapu7g00513 1181 Gene3D - 272 520 IPR027417 -
Lapu7g00513 1181 Gene3D - 926 1176 IPR027417 -
Lapu7g00513 1181 SMART AAA_5 963 1156 IPR003593 GO:0016887
Lapu7g00513 1181 SMART AAA_5 309 501 IPR003593 GO:0016887
Lapu7g00513 1181 Pfam ABC transporter 301 449 IPR003439 GO:0005524
Lapu7g00513 1181 Gene3D ABC transporter type 1, transmembrane domain 903 1178 IPR036640 GO:0005524|GO:0016020
Lapu7g00513 1181 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 247 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu7g00513 1181 MobiDBLite consensus disorder prediction 538 576 - -
Lapu7g00513 1181 ProSitePatterns ABC transporters family signature. 1076 1090 IPR017871 GO:0005524|GO:0016887
Lapu7g00513 1181 Pfam ABC transporter 955 1104 IPR003439 GO:0005524
Lapu7g00513 1181 CDD ABC_MTABC3_MDL1_MDL2 936 1175 - -
Lapu7g00513 1181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 925 1175 IPR027417 -
Lapu7g00513 1181 CDD ABC_6TM_Pgp_ABCB1_D2_like 604 919 - -
Lapu7g00513 1181 Gene3D ABC transporter type 1, transmembrane domain 594 902 IPR036640 GO:0005524|GO:0016020
Lapu7g00513 1181 CDD ABC_6TM_Pgp_ABCB1_D1_like 2 255 - -
Lapu7g00513 1181 ProSitePatterns ABC transporters family signature. 421 435 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00513 Lapu-Chr7 5788703 5795265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00513 1 1175 Calmodulin-binding Proteins AT2G36910 43.829 0.0 957