Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00501 ATGGGCAAAGCCTCTAGTTCTTCCTCCTCTTCAATCACCAGCTGCAGGAACAACCCTTCCAATTCAACTGCATCCTCTCTCACACACCAACACAGTCAAGACCTTCGCACAGATCTTAGGCTTGGACTCAGCATTTCCGCCACTCAACATGTTGGCTCTTCCAGTTCAGGGGGCCACTGGCAATCGATGCAGCCACATCTAAGTAGTTTTTCACAAGCTACCGAAGTGAATGATTGCAGCGATCATACCAGCTTCTTTGTGAAGGTGTACATGGAAGGCATTCCGATTGGTAGAAAACTAAATTTGTTAGCTCATGATAGCTACCACGAGTTAGTGAAGACCCTCGAACAAATGTTTGACACTACCATTCTGTGGGGAACTGAGATGGATGGAGTGCAGTCAGAGAGATGTCATGTTCTAACTTATGAAGATGGAGAAGGAGATTTGATTATGGTTGGAGATGTTCCTTGGGAGATGTTTCTATCAGCTGTAAAGAGGTTGAAGATCACAAGGGTTGAAACATTTGGATGA 531 0.4501 MGKASSSSSSSITSCRNNPSNSTASSLTHQHSQDLRTDLRLGLSISATQHVGSSSSGGHWQSMQPHLSSFSQATEVNDCSDHTSFFVKVYMEGIPIGRKLNLLAHDSYHELVKTLEQMFDTTILWGTEMDGVQSERCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVETFG* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00501 176 MobiDBLite consensus disorder prediction 1 31 - -
Lapu7g00501 176 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Lapu7g00501 176 ProSiteProfiles PB1 domain profile. 84 174 IPR000270 GO:0005515
Lapu7g00501 176 Gene3D - 78 175 - -
Lapu7g00501 176 SUPERFAMILY CAD & PB1 domains 80 170 - -
Lapu7g00501 176 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 36 172 IPR003311 GO:0005634|GO:0006355
Lapu7g00501 176 Pfam AUX/IAA family 72 171 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00501 Lapu-Chr7 5667350 5668443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00501 88 169 B3 DNA Binding Superfamily AT4G23980 36.585 7.34e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lapu7g00501 AUX_IAA 1.5e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00501 K14484 - gmx:100781660 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00501 7 5667350 5668443 Lapu7g00501 7 5667350 5668443 ECH
Lapu6g00920 6 9360630 9361561 Lapu7g00501 7 5667350 5668443 PCT