Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00484 ATGGGTTCTTCTTCCACCATACCTCTCTCTTCTTCCATTTCCATTTTCAAAACCCCCTCTCTCCAACTCCTCAGAAGACCAACCACCTCCGTTTCATTCAACTCTCTTCCCCGTAACCCAATACTCTCTTCCGTTCCTTCAGCCATTGCCACCCCCACTTCTTCCATTCTCACACAACAACCCTTCGAGGATTTATCTCTCGACGACGTGCCCAATAACCTCCAATTTGGCTACGACCACCAACCCGACACCACCCCTGCCCACGTCAGCAACCACGAACTCGACATTTCCAAGTTGTCTTTACCTTCCTCCCTCGTCCATGCCCTACAAAAACGTGGAATTACCAGCCTCTTCCCCATTCAGAGAGCTGTGCTACTGCCTGCACTAGAAGGTAGAGATATCATTGCTCGAGCAAAGACCGGCACTGGCAAAACTTTAGCATTCGGAATTCCGATTCTCAAAGGCCTCACTGATGACGATGACGAAGAGCAAAGTTCTCACGGGAAGCATGGGAGGCTTCCGAAGGCATTGGTCCTAGCACCTACTAGGGAGTTGGCCAAGCAAGTTGAGAAGGAGATACAAGAATCTGCACCTTATCTGAAAACGGTTTGTGTTTATGGGGGTGTTTCTTATGTAACCCAGCAGAGTGCACTTTCGCGCGGTGTTGATGTGGTGGTTGGAACACCGGGTAGAATAATTGATCTAGTGAATGGAGGTAGCCTTAAACTGAATGAGGTGCAGTATTTGGTGCTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAGGTCATTTTGGATAAGGTCCCCGCGCAGCGCCAGACCATGCTGTTTTCTGCTACCATGCCTGGTTGGGTCAAGAAACTGTCCAGAAAGCATTTGAACAATCCTTTGACAATTGATTTGGTTGGCGAACAAGAAGAGAAACTTGCTGAAGGGATCAAACTTTATGCTTTATCAGCCACTGCCACTTCAAAACGAATAGTTCTTTCTGATCTTATAACTGTTTACGCAAAGGGTGGAAAGACTATTGTTTTTACGCAGACAAAAAAGGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATAGCTTCTGAAGCACTGCACGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATACATTATGAACTTCCCAATGATGCTGAGACTTTTGTACATCGTTCTGGTCGCACTGGGCGTGCAGGAAAAGAGGGTACTGCCATATTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCATGATGTTGGTTGCAAATTTGAATTCATTAGTCCACCAGCTATGGAAGAAATTTTGGAGTCATCTGCTGAGCAAGTTGTTGCTACACTTAATAGAGTCCATCCAGAGTCTGTTAAATTTTTCACCGCAACTGCACAAAAACTGGTTGAAGAACGAGGAGCAAGTGCCCTTGCAGCTGCTCTAGCACAGATGAGTGGATTTTCTCGACCTCCATCATGTCGGTCTCTTATCAATCATGAACAGGGATGGATTACATTGCAACTGACTCGAGATTCAGATACTTCTGGAAGATCTTTTTCTGCAAGATCTGTCACTGGATTTCTTTCTGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGACAGGAATAATGGAGCTGTTTTTGATCTTCCCGAGGAAATTGCCAGAGAGTTGCTAAAAAAGGAACTGCCATCTGGAAATACTATTTCCAAAATAACCAAGTTACCTCCTTTGCTAGACGACGAACCTGCAAGTGATTTCTATGGGAAGTTTTCTGACAGAGAGAGAAGAAATCGAAGAGGTTCTAATTCTAGGGATCAAAGAGGCTTTAGAAGTTCACGGGGATGGGAAGGAGGCCAAGACTCTGATGATGAGTTTGGACGAGGCGGTAGAAATTTCAGATCAGGCAACAGGTCTCGAATGGGAAAAAGCAGCGGCGATGACTGGCTAATTGGAGGTGGACGATCAAACAGGTTTTCATCGCCAAACAGAGGTGGGCACGGAGGGGCATGCTTTAATTGTGGACAACCTGGCCATCGAGCATCAGATTGTCGCAAAAAACGAGATTTTTTCTAG 2214 0.4521 MGSSSTIPLSSSISIFKTPSLQLLRRPTTSVSFNSLPRNPILSSVPSAIATPTSSILTQQPFEDLSLDDVPNNLQFGYDHQPDTTPAHVSNHELDISKLSLPSSLVHALQKRGITSLFPIQRAVLLPALEGRDIIARAKTGTGKTLAFGIPILKGLTDDDDEEQSSHGKHGRLPKALVLAPTRELAKQVEKEIQESAPYLKTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLVNGGSLKLNEVQYLVLDEADQMLAVGFEEDVEVILDKVPAQRQTMLFSATMPGWVKKLSRKHLNNPLTIDLVGEQEEKLAEGIKLYALSATATSKRIVLSDLITVYAKGGKTIVFTQTKKDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDAETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLEHDVGCKFEFISPPAMEEILESSAEQVVATLNRVHPESVKFFTATAQKLVEERGASALAAALAQMSGFSRPPSCRSLINHEQGWITLQLTRDSDTSGRSFSARSVTGFLSDVYSPAADEVGKIHLIADDRNNGAVFDLPEEIARELLKKELPSGNTISKITKLPPLLDDEPASDFYGKFSDRERRNRRGSNSRDQRGFRSSRGWEGGQDSDDEFGRGGRNFRSGNRSRMGKSSGDDWLIGGGRSNRFSSPNRGGHGGACFNCGQPGHRASDCRKKRDFF* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00484 737 Gene3D - 323 524 IPR027417 -
Lapu7g00484 737 Pfam DEAD/DEAH box helicase 118 293 IPR011545 GO:0003676|GO:0005524
Lapu7g00484 737 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 92 686 - -
Lapu7g00484 737 Pfam Helicase conserved C-terminal domain 334 438 IPR001650 -
Lapu7g00484 737 Gene3D - 709 735 - -
Lapu7g00484 737 CDD GUCT_Hera 533 612 - -
Lapu7g00484 737 Gene3D - 95 308 IPR027417 -
Lapu7g00484 737 Pfam GUCT (NUC152) domain 525 624 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lapu7g00484 737 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 458 IPR027417 -
Lapu7g00484 737 FunFam Nucleolar RNA helicase II 326 516 - -
Lapu7g00484 737 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 125 304 IPR014001 -
Lapu7g00484 737 SMART c2hcfinal6 716 732 IPR001878 GO:0003676|GO:0008270
Lapu7g00484 737 SUPERFAMILY Retrovirus zinc finger-like domains 697 735 IPR036875 GO:0003676|GO:0008270
Lapu7g00484 737 Pfam Zinc knuckle 716 732 IPR001878 GO:0003676|GO:0008270
Lapu7g00484 737 CDD DEADc 105 305 - -
Lapu7g00484 737 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 478 IPR001650 -
Lapu7g00484 737 SMART helicmild6 358 438 IPR001650 -
Lapu7g00484 737 SMART ultradead3 113 321 IPR014001 -
Lapu7g00484 737 MobiDBLite consensus disorder prediction 632 726 - -
Lapu7g00484 737 CDD SF2_C_DEAD 330 447 - -
Lapu7g00484 737 ProSiteProfiles Zinc finger CCHC-type profile. 717 732 IPR001878 GO:0003676|GO:0008270
Lapu7g00484 737 MobiDBLite consensus disorder prediction 632 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00484 Lapu-Chr7 5527111 5534984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00484 99 460 Eukaryotic Initiation Factors Gene Family AT1G72730 35.405 7.47e-61 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00484 - - gmx:100815040 1224.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00937 6 9559989 9566169 Lapu7g00484 7 5527111 5534984 ECH
Lapu7g00484 7 5527111 5534984 Lapu7g00484 7 5527111 5534984 ECH
Lapu6g00937 6 9559989 9566169 Lapu7g00484 7 5527111 5534984 PCT