Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00481 ATGTTTACATATGAAGTGCAGTTTGGAGTGAAAATGTCTTCCTCAAGGCCTAGCCAATCGTCCAGCAATTCTGGGAGATCAAGACATAGTGCTAGGGTTCTTGCTCAGACAACTGTAGATGCGAAGCTCCATGCAACTTTTGAGGAGTCTGGTAGTTCCTTTGACTACTCCAGTTCGGTGCGAGTCTCTGGTACAGCTGATGGAGTCAATCAACCGAGGTCTGATAAAGTTACGACAGCTTACCTCCATCACATACAGAGAGGAAAGATGATTCAGCCTTTTGGATGCTTGTTGGCTTTAGATGAGAAAACATGTAAGGTCATTGCATACAGTGAGAACGCTCCTGAAATGCTGACCATGGTTAGTCATGCTGTCCCCAGTGTTGGTGACCACCCTGCTCTTGGCATTGGCACTGACATAAAAACTCTATTCACCGGACCTAGTGCTTCTGCATTGCAAAAGGCTCTAGGATTTGGGGAGGTTTCACTTCTTAACCCGATCCTTGTTCATTGCAAGACCTCTGGGAAGCCCTTTTATGCGATTATTCATCGTGTTACTGGCAGTTTGATCGTTGACTTTGAGCCAGTCAAGCCTTATGAAGTTCCCATGACTGCAGCTGGTGCCTTGCAGTCTTACAAGCTTGCTGCCAAAGCAATTACCCGGTTGCAATCTCTGCCTAGTGGGAGCATGGACAGATTGTGTGATACAATGGTTCAAGAAGTTTTTGAACTCACAGGCTACGACAGGGTGATGGCTTATAAATTTCATGAGGATGACCATGGGGAGGTGATTGCTGAGATAACAAAGCCAGGCCTTGAGCCATATTTGGGTTTGCATTATCCAGCCACTGATATTCCCCAAGCTTCACGCTTTTTATTTATGAAGAACAAGGTCCGTATGATAGTTGATTGTCATGCTAAGCACGTGAAGGTTCTTCAAGATGAAAAACTCCCTTTTAATTTGACTTTGTGTGGTTCCACCTTAAGGGCTCCTCATAGTTGTCATGCTCAATACATGGCAAACATGGATTCAATTGCTTCCCTGGTCATGGCAGTTGTAGTCAATGACAACGAAGAAGATGGGGACACTGATGCTGTTCAGCCACAAAAGAGGAAGAGACTTTGGGGTTTGGTAGTTTGCCATAACACTACTCCCAGGTTTGTTCCCTTTCCTCTTAGGTATGCTTGTGAATTTCTGGCTCAAGTATTTGCCATCCATGTGAACAAAGAAATAGAGTTAGAATATCAGATTATTGAGAAGAATATCCTGCGCACACAGACACTCTTGTGCGATATGCTGATGCGGGATGCACCCCTTGGAATTGTATCACAGAGCCCTAATATAATGGATCTAGTGAAATGTGATGGAGCTGCCCTCTTATATAAGAACAAGGTATGGAGATTAGGAGTGACACCAAGTGAATCCCAGATAAGAGAGATAGCTCTGTGGTTGTCTGAGTACCATATGGATTCCACAGGCTTGAGTACGGATAGCTTGTCTGATGCAGGCTTCCCATCGGCTCTTTCTCTCGGTGATATTGTGTGTGGAATGGCAGCTGTCAGAATAACTTCGAAAGACGTAGTATTTTGGTTTCGGTCACACACTGCTGCAGAAATCCGATGGGGTGGTGCTAAGCATGAAGCTGGAGAAAAAGATGATGGTAGGAGGATGCATCCAAGATCGTCATTCAAGGCTTTCCTTCAAGTCGTGAAGGCAAGGAGCTTGCCGTGGAAGGACTATGAAATGGATGCTATTCATTCCTTGCAGCTAATACTGAGAAATGCATTCAAAGATACTGAGAGCACAGATTTACAGACAAAGGCAATTAATACAAAACTAAGTGATTTGAAGATCGAAGGGATGCAGGAACTGGAAGCAGTTACTAGCGAGATGGTTAGGTTGATTGAAACTGCAACAGTGCCTATTTTGGCAGTTGATGTCGATGGGCTGGTCAATGGGTGGAACATAAAAATTGCTGAGTTGACAGGTCTTCCAGTTGGTGAAGCTATTGGAAAGCATTTACTCACCCTTGTTGAGGATTCTTCAACTGATAGAGTCAAGAAGATGCTTGACTTGGCATTACTAGGTGAAGAAGAGAAGAATGTTCAATTTGAGATCAAAACATTCGGGTCTAAGATGGATTCTGGTCCTATTAGTTTAGTAGTAAACGCTTGTGCAAGCAGGGATCTTCGAGATAATGTTGTTGGTGTTTGCTTTGTGGCCCATGATATAACTACTCAGAAGAATGTCATGGACAAATTCACCCGTATTGAAGGTGATTACAAGGCAATTGTACAGAACCCCAATCCATTAATCCCCCCTATATTTGGCACAGATGAATTTGGCTGGTGTTGTGAGTGGAATCCAGCTATGTCAAAGTTAACTGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTGGGAGAGGTTTTCGGCACCCAGATGGCTTGTTGTCGTCTAAAGAATCAAGAAGCTTTTGTTAATTTTGGCATTGTACTTAATAAAGCCATGACCGGCTCAGAAACAGAGAAAGTTGCTTTTGGTTTCTTTGCTCGGAATGGCAAGTATGTAGAGTGCCTACTTTCCGTGAGTAAGAAGTTGGACGTAGAGGGCCTAGTTACTGGGGTCTTCTGCTTCTTACAGCTAGCTAGCCCGGAACTCCAGCAAGCATTACATATTCAGCGCCTATCTGAGCAAACTGCCTTGAAGAGATTGAATGCATTAACTTACATGAAAAGGCAGATCAAGAATCCTTTATGTGGAATTATATTTTCCCGGAAAATGTTGGAGGGCACTGAATTGGGAACAGAACAGAAACAATTTCTGCATACTAGTGCTCAATGCCAGCGGCAACTTAGCAAAGTTCTTGACGACTCAGATCTTGACAGCATCTTAGACGGTTACTTGGATCTTGAGATGGCTGAATTCACTCTGCACGAAGTAATGGTTGCCTCCCTTAGTCAAGTCATGACAAAAAGTAATGGAAAGAGTATCCGAATAGTCAATGATGTTGCAGAACAAATCGTAATGGAAACTTTATACGGTGATAGTCTTAGGCTTCAGCAGGTCTTGGCCGACTTCTTACTTATTTCCATCAATTTCACACCAGATGGAGGTCAGGTTGTTGTAGCAGGCTCTCTAACCAAAGAACAATTAGGGAAATCCGTCCATCTTGTTAAGTTAGAGCTCAGCATAACACACGGTGGGAGTGGGGTGCCAGAAGCATTACTGAACCAGATGTTTGGAAATAATGGATTAGAATCGGAGGAGGGTATGAGCCTACTGATCAGCAGAAAGCTGCTGAAGCTCATGAATGGAGATGTTCGCTATCTAAGGGAAGCAGGAAAATCAGCTTTTATCCTCTCCGCTGAACTTGCTGCAGCCCATAATTTGAAAACTTAA 3405 0.4364 MFTYEVQFGVKMSSSRPSQSSSNSGRSRHSARVLAQTTVDAKLHATFEESGSSFDYSSSVRVSGTADGVNQPRSDKVTTAYLHHIQRGKMIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIKTLFTGPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIVDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMDRLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVKVLQDEKLPFNLTLCGSTLRAPHSCHAQYMANMDSIASLVMAVVVNDNEEDGDTDAVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQIIEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKVWRLGVTPSESQIREIALWLSEYHMDSTGLSTDSLSDAGFPSALSLGDIVCGMAAVRITSKDVVFWFRSHTAAEIRWGGAKHEAGEKDDGRRMHPRSSFKAFLQVVKARSLPWKDYEMDAIHSLQLILRNAFKDTESTDLQTKAINTKLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNIKIAELTGLPVGEAIGKHLLTLVEDSSTDRVKKMLDLALLGEEEKNVQFEIKTFGSKMDSGPISLVVNACASRDLRDNVVGVCFVAHDITTQKNVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMSKLTGWKREEVMDKMLLGEVFGTQMACCRLKNQEAFVNFGIVLNKAMTGSETEKVAFGFFARNGKYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLNALTYMKRQIKNPLCGIIFSRKMLEGTELGTEQKQFLHTSAQCQRQLSKVLDDSDLDSILDGYLDLEMAEFTLHEVMVASLSQVMTKSNGKSIRIVNDVAEQIVMETLYGDSLRLQQVLADFLLISINFTPDGGQVVVAGSLTKEQLGKSVHLVKLELSITHGGSGVPEALLNQMFGNNGLESEEGMSLLISRKLLKLMNGDVRYLREAGKSAFILSAELAAAHNLKT* 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00481 1134 SMART HKATPase_4 1016 1128 IPR003594 -
Lapu7g00481 1134 PIRSF Phytochrome_conventional 10 1134 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lapu7g00481 1134 Gene3D PAS domain 773 885 - -
Lapu7g00481 1134 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 965 1118 IPR036890 -
Lapu7g00481 1134 SMART HisKA_10 904 969 IPR003661 GO:0000155|GO:0007165
Lapu7g00481 1134 SMART gaf_1 229 421 IPR003018 GO:0005515
Lapu7g00481 1134 FunFam Phytochrome 623 754 - -
Lapu7g00481 1134 SUPERFAMILY GAF domain-like 419 597 - -
Lapu7g00481 1134 CDD PAS 638 744 IPR000014 -
Lapu7g00481 1134 PRINTS Phytochrome signature 526 545 IPR001294 GO:0006355|GO:0009584
Lapu7g00481 1134 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355|GO:0009584
Lapu7g00481 1134 PRINTS Phytochrome signature 722 739 IPR001294 GO:0006355|GO:0009584
Lapu7g00481 1134 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355|GO:0009584
Lapu7g00481 1134 PRINTS Phytochrome signature 630 646 IPR001294 GO:0006355|GO:0009584
Lapu7g00481 1134 PRINTS Phytochrome signature 649 664 IPR001294 GO:0006355|GO:0009584
Lapu7g00481 1134 PRINTS Phytochrome signature 559 577 IPR001294 GO:0006355|GO:0009584
Lapu7g00481 1134 PRINTS Phytochrome signature 742 762 IPR001294 GO:0006355|GO:0009584
Lapu7g00481 1134 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355|GO:0009584
Lapu7g00481 1134 PRINTS Phytochrome signature 441 461 IPR001294 GO:0006355|GO:0009584
Lapu7g00481 1134 SUPERFAMILY PYP-like sensor domain (PAS domain) 633 740 IPR035965 -
Lapu7g00481 1134 ProSiteProfiles PAS repeat profile. 627 697 IPR000014 -
Lapu7g00481 1134 SUPERFAMILY PYP-like sensor domain (PAS domain) 774 880 IPR035965 -
Lapu7g00481 1134 Pfam PAS fold 80 196 IPR013654 GO:0006355
Lapu7g00481 1134 CDD PAS 771 882 IPR000014 -
Lapu7g00481 1134 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Lapu7g00481 1134 Gene3D PAS domain 621 758 - -
Lapu7g00481 1134 Gene3D PAS domain 85 332 - -
Lapu7g00481 1134 Gene3D - 210 572 IPR029016 -
Lapu7g00481 1134 Pfam Phytochrome region 424 599 IPR013515 GO:0006355|GO:0009584
Lapu7g00481 1134 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1016 1124 IPR003594 -
Lapu7g00481 1134 MobiDBLite consensus disorder prediction 13 32 - -
Lapu7g00481 1134 PANTHER OS08G0260000 PROTEIN 78 965 - -
Lapu7g00481 1134 NCBIfam PAS domain S-box protein 634 750 IPR000014 -
Lapu7g00481 1134 Gene3D - 416 589 IPR043150 -
Lapu7g00481 1134 FunFam Phytochrome 416 550 - -
Lapu7g00481 1134 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 197 IPR035965 -
Lapu7g00481 1134 Pfam GAF domain 230 411 IPR003018 GO:0005515
Lapu7g00481 1134 ProSiteProfiles Histidine kinase domain profile. 911 1130 IPR005467 -
Lapu7g00481 1134 Pfam PAS fold 630 744 IPR013767 GO:0006355
Lapu7g00481 1134 Pfam PAS fold 760 882 IPR013767 GO:0006355
Lapu7g00481 1134 SMART pas_2 759 828 IPR000014 -
Lapu7g00481 1134 SMART pas_2 629 695 IPR000014 -
Lapu7g00481 1134 Gene3D - 944 1121 IPR036890 -
Lapu7g00481 1134 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 401 IPR016132 -
Lapu7g00481 1134 ProSiteProfiles PAS repeat profile. 760 812 IPR000014 -
Lapu7g00481 1134 SUPERFAMILY GAF domain-like 209 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00481 Lapu-Chr7 5492387 5498171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00481 12 1130 Histidine Kinase Gene Family AT1G09570 80.677 0.0 1911
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00481 K12120 - gmx:100790763 2075.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00481 7 5492387 5498171 Lapu7g00481 7 5492387 5498171 ECH