Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00473 ATGCCTTTGTATGAGTTATACCGTCTGGCTAGAGAGAAGCTTGGTAAAGAGAATAACAGCACACATGCATCTGATCAATGTTCCTCTCCTGAGAATGATTTTTTTGAGCTAGTTTGGGAGAATGGTCAGATTTCGAGCCAGGGTCAGTCTAGTAGAGTTAGAAGGAGCCCACCTTGCAGGAGTTTGCCATCTCACTGCTTACCATCTCACAGTCCCAAGGGTAGAGACAAAGATGTAGGATATGGTACCAACAGGATGGGAAAATTTAGGGATTTAGACTCTGGATTGAATGAAATTTCAATGTCGGTGCCGTCCCGCGAAGTTGATTTCTGTCAAGACGAGGATGTGTTACCTTGGTTTGATTATACAACAATGGATGGTTCTTTGCAACATGACTATGGTTCTGATTTCCTCCCTGCCCCAACTAGTTTTACTCTATTGGATAAAAAAAGTAATAGCAACATGGGTTTGAGGGATTCTCATAAAACTTCTGAAGAACAAGGGAATGTTTTCAAGGGTTCTTCAGCTGAACAGGTTGAGACTGCCGCAACCAAAGCTAGCACCAGTCAGTTATACCCTCCGTCATTGCATCATTGTCAAACATCTTTTGTATCTTCAAGATCAAGAGCATCTGATATAACTGAAAATAACAATACTAGTAATGCAAACCAGGATGCCACTTATGGCGAAATTACTCATTTTCTTTCTTCCTCAAGTGATTTTTCTAGCTCAAAGGGGAAGAAGCAAGAGCCACCTCTGCCTGGCAATGGTTCCAGTTCCATTATGAATTTCTCCCATTTCGCAAGGCCTGCTGCAATGGTAAGAGCTAATCTTCATAACATTGGCTTGAAGTCAGGTCTGTCTTCAGCAAGATCAGATAGTATGGAAATTAAGAATAAAGGTGCAGCTGCAACTAGCAGCAATCCTCCTGAATCAATTGTTGTTGATTCAAGTGGTGAATGTTCGAAGGAACTGACCATGCACTCTCAGCAGGTTGTGGATAAATCCAAGACTGATTTGAACTCTTTCCCGCCGAAATCTATTGAGCAGAACGCAGTGCTTTGTAAGCAGTCAGAGCCTGCTTGTAATGAGAGTTCCACTAAGATTGACCAAATTCCCGATCAAGTCCTTGTTGACAGTGGGGCTAAAGGGCAGACAACTGCTGAAAAAAGTACGGAGCCAGCAGTAGCCTCTTCCTCTGTTTGCTCTGGCAATGGTGCAGACAGAGGTTCAGATGAGCCAAATCAAAATTTGAAGCGAAAAAGAAAAGACACCGATGACTCTGAGTTCCATAGTGAAGATGCTGAAGAAGAATCAGCGGGTGTTAAAAAGGCAGCTGGTGGGCGTGGAGGTACAGGTTCCAAGAGAACCCGAGCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAACGAGAAAATGCGTGCGTTACAAGAACTCATTCCAAATTGCAATAAGGTGGATAAAGCCTCAATGCTGGACGAGGCCATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATATGCCTCCGATGATGTTACCTGCAGGAATGCAGCACATGCATGCACCACATATGGCTCCATTTTCACCGATGGGTGTTGGCATGCATATGGGATATGGTATGGGTTATGGGATGGGAATGCCTGACTTGAATGGAGGATCTTCAAGATTCCCTATGATTCAAGTGCCCCAAATGCAAGGAAGTCATATCCCTGTCGCCCATGTGTCTGGACCTACTGCTTTACATGGGATGGCCAGATCAAATCTTCCAGGGCTTGGGCTTCATGGACAAGGACATCCCATGGCAATGGTGCGAACTCCCGTGTTTCCCTTTTCAGGAGGACCTGTCATGAATTCACCAGCTCTGGGACTACATGCCTGTGGATCATCAGGACTTGTTGAAACCGTGGATTCAGCTTCTGCATCTGGCTTAAAGGATCAAATGCCAAATATTGGCCCACAAGTTAAGCAAATCACTGGTGGCCGTGACTCAACAAGTCAGATGCCTACACAGAGTGAAGCAGCTGTTGTTGGATTTGAGCAATCTGCTTTGGTTCATAGTAGCGGTCATACATGTGAGGCTAATGACAATGGAGCTGTTAATCCTTGTCCCAGCAGATAA 2163 0.4448 MPLYELYRLAREKLGKENNSTHASDQCSSPENDFFELVWENGQISSQGQSSRVRRSPPCRSLPSHCLPSHSPKGRDKDVGYGTNRMGKFRDLDSGLNEISMSVPSREVDFCQDEDVLPWFDYTTMDGSLQHDYGSDFLPAPTSFTLLDKKSNSNMGLRDSHKTSEEQGNVFKGSSAEQVETAATKASTSQLYPPSLHHCQTSFVSSRSRASDITENNNTSNANQDATYGEITHFLSSSSDFSSSKGKKQEPPLPGNGSSSIMNFSHFARPAAMVRANLHNIGLKSGLSSARSDSMEIKNKGAAATSSNPPESIVVDSSGECSKELTMHSQQVVDKSKTDLNSFPPKSIEQNAVLCKQSEPACNESSTKIDQIPDQVLVDSGAKGQTTAEKSTEPAVASSSVCSGNGADRGSDEPNQNLKRKRKDTDDSEFHSEDAEEESAGVKKAAGGRGGTGSKRTRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPMMLPAGMQHMHAPHMAPFSPMGVGMHMGYGMGYGMGMPDLNGGSSRFPMIQVPQMQGSHIPVAHVSGPTALHGMARSNLPGLGLHGQGHPMAMVRTPVFPFSGGPVMNSPALGLHACGSSGLVETVDSASASGLKDQMPNIGPQVKQITGGRDSTSQMPTQSEAAVVGFEQSALVHSSGHTCEANDNGAVNPCPSR* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00473 720 MobiDBLite consensus disorder prediction 167 226 - -
Lapu7g00473 720 MobiDBLite consensus disorder prediction 413 443 - -
Lapu7g00473 720 MobiDBLite consensus disorder prediction 45 81 - -
Lapu7g00473 720 CDD bHLH_AtPIF_like 458 520 IPR047265 -
Lapu7g00473 720 MobiDBLite consensus disorder prediction 286 315 - -
Lapu7g00473 720 MobiDBLite consensus disorder prediction 382 412 - -
Lapu7g00473 720 PANTHER TRANSCRIPTION FACTOR PIF3 1 682 IPR044273 GO:0003700|GO:0006355
Lapu7g00473 720 MobiDBLite consensus disorder prediction 148 226 - -
Lapu7g00473 720 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 458 507 IPR011598 GO:0046983
Lapu7g00473 720 MobiDBLite consensus disorder prediction 382 473 - -
Lapu7g00473 720 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 455 518 IPR036638 GO:0046983
Lapu7g00473 720 MobiDBLite consensus disorder prediction 286 316 - -
Lapu7g00473 720 SMART finulus 464 513 IPR011598 GO:0046983
Lapu7g00473 720 MobiDBLite consensus disorder prediction 238 261 - -
Lapu7g00473 720 FunFam Basic helix-loop-helix transcription factor 453 516 - -
Lapu7g00473 720 Pfam Helix-loop-helix DNA-binding domain 462 508 IPR011598 GO:0046983
Lapu7g00473 720 Gene3D - 453 516 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00473 Lapu-Chr7 5408998 5413981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00473 1 587 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.000 7.90e-74 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu7g00473 HLH 7.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00473 K12126 - gmx:100794974 1154.81