Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00472 ATGACGAGGCAGAAAGTGAAACTTGCGTATATCAGTGATGTGACGGCAAGGAAATCCACATACAAGAAAAGGAAGAAGGGTATCATCAAGAAAGTGAGAGAACTGACCATTCTCTGTGGTATCCCAGCCTGCGCTATAATTTCAAGTCCTTTTGATGCTAAAGCGGAGATTTGGCCAGATCCAGAGGGAGCCAAGCAAGTGATTCAGAGGTATCTGGATGCATCTGTGATAGATGAAAGCAAGAATGTCAACCAAGAGAGTTTCCTCATGCAGAGAATTGCCAAAGCCCAGGAGCACCTCAGGAAGCTGCGTCAGCAGAACCAAGAGAAGGAGAACATCTTGTCCATCTTCAACTACATGCAAGGTCAAGACCTACCAACTGATCTTCAAGAACTGAAACAACTCAACAACCTCATTGAAAACAGTATGAAGGAAATTAAAAACCAGATCGATGAGCTCAATTGTGAGTCTATGTAG 477 0.4361 MTRQKVKLAYISDVTARKSTYKKRKKGIIKKVRELTILCGIPACAIISSPFDAKAEIWPDPEGAKQVIQRYLDASVIDESKNVNQESFLMQRIAKAQEHLRKLRQQNQEKENILSIFNYMQGQDLPTDLQELKQLNNLIENSMKEIKNQIDELNCESM* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00472 158 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Lapu7g00472 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu7g00472 158 PANTHER MADS BOX PROTEIN 3 151 - -
Lapu7g00472 158 Coils Coil 86 113 - -
Lapu7g00472 158 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu7g00472 158 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu7g00472 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Lapu7g00472 158 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Lapu7g00472 158 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lapu7g00472 158 Coils Coil 129 156 - -
Lapu7g00472 158 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00472 Lapu-Chr7 5382784 5383260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00472 1 153 MADS-box Gene Family AT5G26630 45.513 3.67e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu7g00472 SRF-TF 5.9e-13 No_clan