Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00457 ATGCCAGCGAAGAAATATTACTGCGACTACTGCGACAAGCAATTCCAAGACACACCAGCCGATCGGAAACGACACGCTCAGGGTATTCAACACCACCAAGCCAAAGCTCGCTGGTACGATTCCTTCAATCAACACCACCAACAAATCCCTAATCCACCCCTTTGCTTTCACTTCCTCAACACGGGTTTTTGTCGTTACGGCCACTCTTGCAAGTACCTTCATCCCACTCCCAACAAAACTACACACCACACTCCAATCCCCTCGCCAGTTGTGCATGCAGGGAATGTGGTAGGAGTGTCATTAGGAAATTTACCCCCGTCGCTGCAGCCTCCGCCGGAGGCTGGATATCCCCGCCTCCCCTTCGTGGATTGGGGATAG 378 0.5238 MPAKKYYCDYCDKQFQDTPADRKRHAQGIQHHQAKARWYDSFNQHHQQIPNPPLCFHFLNTGFCRYGHSCKYLHPTPNKTTHHTPIPSPVVHAGNVVGVSLGNLPPSLQPPPEAGYPRLPFVDWG* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00457 125 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Lapu7g00457 125 PANTHER NUCLEASE-RELATED 1 125 - -
Lapu7g00457 125 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 75 IPR000571 GO:0046872
Lapu7g00457 125 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Lapu7g00457 125 SUPERFAMILY CCCH zinc finger 49 77 IPR036855 GO:0046872
Lapu7g00457 125 SUPERFAMILY beta-beta-alpha zinc fingers 4 49 IPR036236 -
Lapu7g00457 125 Gene3D - 50 94 - -
Lapu7g00457 125 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
Lapu7g00457 125 Gene3D Classic Zinc Finger 3 49 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu7g00457 zf-U1 7.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00457 K13152 - gmx:100527203 195.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00457 7 5200364 5206901 Lapu7g00457 7 5200364 5206901 ECH