Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00454 ATGGCTGGTAGTGTTATAACACTTTTGGCCATGATTGTTGTACAATTGGGTTATGCAGGGATGAATATTTCCTCAAAGCTTGCAATACAATCTGGCATGCACCCTCTTGTCCTTGTTGCTTATCGTCAAATTTTTGGCACTCTCTCCTTAGCTCCTTTTGCTTATTGGTTTGAACGGAATACGGCTCCCCGAATGACAAAGCGCATTGCGTTGCAGATAGTATTATCATCCTTAACAGGACAAGAGTGTTTGAGGATCAAGACCAAGCCCGGAGTAGCAAAGGCGTTAGGGACAATCCTCAGTGTGGGTGGAGCAGTGCTTCTATCATTTTACCATGGAGAAGTCCTTGGTTTGGGTGAGTCAAAAGTTCACTGGAGATATGCAGAAAGAATGGAAAGAGAAGCCTCTTCTGGTGGTGAAACAAACTTGCTTCTGGGTCCTGGTGCTGTAATTGGTAGCGCTCTTGTTTGGGCAGTATGGTTCATAATTCAAGCAAACATGAGCAAGAGCTATCCAGTTCCTTATACCAGCACTTTCTACATGTGTTTGATGGCAAGCATTCAGTGTTTGGCCATTGCCTTGTCTGTTGAACACGAGGCCTCAGCTTGGTCACTGCACAGTACCATAAGACTTACCTCTGCACTTTATGCGGGAATTATTTCTACCGGGCTAACGTACGTGCTCCTCTCGTGGTCCATTGAGAAGAAAGGTCCTCTCTATGTGTCTGTGTTCTCCCCTTTGCTGCTTATCATCATTGCTGTTGTTAGCTGGGCCCTGCTGCACGAGCAATTATACGTTGGCACTGCCATAGGGTCTCTGCTGATAGTGTTTGGGCTGTATTTTGTGTTGTGGGGAAAGAACAGAGAGGTGAATAAGAATGAGGGTGTTCATGAGATAACGGAGGCAATGAAGGATGATGTGAAAGACCTGGAATTGCAACCCTATAATTCTTTCAAGGGTAACGGTAACCATGATCGTGATAATGATCGAAGGGAAGAGGAGCTTTTCAGCCGGCTCTTTGCGAAGAAAGAGATGCGTATTCTCATGGTAGGTCTCGACGCTGCTGGTAAGACTACCATATTGTACAAGCTCAAGCTGGGAGAGATCGTGACAACCATTCCCACTATTGGTTTTAATGTGGAGACCGTGGAATATAAAAATATTAGCTTTACTGTATGGGATGTGGGTGGCCAAGACAAGATTCGTCCATTATGGAGACACTACTTCCAAAACACCCAGGGACTTATCTTTGTTGTGGATAGCAATGATCGCGACCGTGTTGTTGAGGCTAGAGATGAGCTCCACCGGATGCTGAATGAGGATGAGTTGAGAGATGCAGTTCTCCTTGTATTTGCCAACAAACAAGATCTTCCAAATGCTATGAATGCCGCAGAAATCACAGACAAGCTTGGTCTTCATTCTCTTCGTCAACGCCACTGGTATATCCAGAGCACATGTGCCACCTCTGGGGAAGGGCTCTATGAAGGACTGGACTGGCTCTCCAACAATATAGCTAACAAGGCTTAG 1527 0.4558 MAGSVITLLAMIVVQLGYAGMNISSKLAIQSGMHPLVLVAYRQIFGTLSLAPFAYWFERNTAPRMTKRIALQIVLSSLTGQECLRIKTKPGVAKALGTILSVGGAVLLSFYHGEVLGLGESKVHWRYAERMEREASSGGETNLLLGPGAVIGSALVWAVWFIIQANMSKSYPVPYTSTFYMCLMASIQCLAIALSVEHEASAWSLHSTIRLTSALYAGIISTGLTYVLLSWSIEKKGPLYVSVFSPLLLIIIAVVSWALLHEQLYVGTAIGSLLIVFGLYFVLWGKNREVNKNEGVHEITEAMKDDVKDLELQPYNSFKGNGNHDRDNDRREEELFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00454 508 SMART sar_sub_1 329 504 IPR006689 GO:0003924|GO:0005525
Lapu7g00454 508 PRINTS GTP-binding SAR1 protein signature 401 426 IPR006689 GO:0003924|GO:0005525
Lapu7g00454 508 PRINTS GTP-binding SAR1 protein signature 346 369 IPR006689 GO:0003924|GO:0005525
Lapu7g00454 508 PRINTS GTP-binding SAR1 protein signature 374 398 IPR006689 GO:0003924|GO:0005525
Lapu7g00454 508 PRINTS GTP-binding SAR1 protein signature 446 467 IPR006689 GO:0003924|GO:0005525
Lapu7g00454 508 Gene3D - 330 508 IPR027417 -
Lapu7g00454 508 SUPERFAMILY Multidrug resistance efflux transporter EmrE 186 288 - -
Lapu7g00454 508 SMART rab_sub_5 345 507 - -
Lapu7g00454 508 PANTHER ADP RIBOSYLATION FACTOR-RELATED 335 503 IPR024156 GO:0005525
Lapu7g00454 508 NCBIfam small GTP-binding protein domain 343 477 IPR005225 GO:0005525
Lapu7g00454 508 CDD Arf1_5_like 345 503 IPR045872 GO:0003924
Lapu7g00454 508 ProSiteProfiles small GTPase Arf family profile. 338 504 - -
Lapu7g00454 508 SMART arf_sub_2 328 508 - -
Lapu7g00454 508 FunFam ADP-ribosylation factor 1 330 508 - -
Lapu7g00454 508 Pfam ADP-ribosylation factor family 335 504 IPR006689 GO:0003924|GO:0005525
Lapu7g00454 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 506 IPR027417 -
Lapu7g00454 508 Pfam EamA-like transporter family 149 283 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00454 Lapu-Chr7 5171994 5178284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00454 5 287 Nodulin-like Gene Family AT1G09380 48.758 3.65e-109 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00454 K07937 - var:108325504 527.709