LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu7g00437	ATGGATTTCCAGGGATTCCTGAACGACTTGCACGATTGGGAACTTTCTAGAAAGGATAAACCACAAACAATGAAGTCACAAAAGGAAAATCAATTCACAGAAGCTTCATCTTCTCGACTTACTGGATCTTTGGGTGTGGAGTCAAAAGTTAATGATCCTTTCAATCGGTTGCATAGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCCGAGAAAGATCTGGGTAATGAGTTTTTCAAGCAGAAGAAATTTAAGGAAGCTAGAGACTGCTATTCAAGGAGCATTGCCTTATCACCAACAGCTGTAGCATATGCAAACAGGGCAATGGCCAATATCAAGCTCAGAAGATTCCAAGAGGCCGAGGATGACTGCACAGAGGCCTTAGATCTTGATGATCGTTACATAAAAGCATACTCACGAAGAGCAACAGCTAGAAAAGAGCTTGGAAAAATTAAAGAATCAATGGAGGATGCTGAATTTGCTTTGAGGTTGGAACCGAACAATCAAGAAGTCAAGAAACAGTATGCTGATGCTAAATCTTTGTATGAGAAAGATATTCTTCAGAAAGCGTCAGGAGCTCTGAGAAGCACTGTACAGGGAACTCAAAAAGTGGGAAAGCCAGAGGAAAAAGTTAATGGAGTCAGTATCCACCCCATTTCACATGGTGCTCAGAAGTCCGGTCCAGCTGAAGTTAATCATAAAAAGGTTAATGAGCAGCAAATACCTGTTAAAGAATCACTTGTAACAGAGCAGGTTGATAGCAGAGACACAATAACCATAAAAAGGCCTCAAGCACAAGGAGGTGATGATTCTAAGTCAGGTTTAAGTGCGAGTAACAGTTTGGAGCAGAGAAATCACAGAACTATTAAGCAGGAAATGCAAGCTTCTGTTCAACAGCTTGCTTCTCGTGCCGCTTCTAGAGCCATGGCTGAAGCTGCCAAAAACATAACACCACCAACCACTGCGTATCAGTTTGAAGTCTCTTGGAGAGCATTTTCAGGTGATCTTGCTCTGCAGGCTCGTCTATTAAAGGCTATATCTCCCCGTGAATTACCAAAAATATTCAAAAATGCCTTATCTTCAACCCTACTTGTTGACATCATCAAGTGTCTTTCATCTTTTTTCAGTGAGGACATGGATCTGGTTGTCGGTTATATGGAGCATTTGATCAAAGTACCAAGATTTGACATGATTATAATGTGCCTTTCATCAACAAATAAGGATGACATACGCAAGATCTGGGATGAAGTGTTCAGAAGTGAGGCAACACCAATTGAGTATGCAGAGATTCTAGACAACATCCGATCAAAGTTCTGCCTTGGACAGTGA	1332	0.4122	MDFQGFLNDLHDWELSRKDKPQTMKSQKENQFTEASSSRLTGSLGVESKVNDPFNRLHSSFVPEDVPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQEAEDDCTEALDLDDRYIKAYSRRATARKELGKIKESMEDAEFALRLEPNNQEVKKQYADAKSLYEKDILQKASGALRSTVQGTQKVGKPEEKVNGVSIHPISHGAQKSGPAEVNHKKVNEQQIPVKESLVTEQVDSRDTITIKRPQAQGGDDSKSGLSASNSLEQRNHRTIKQEMQASVQQLASRAASRAMAEAAKNITPPTTAYQFEVSWRAFSGDLALQARLLKAISPRELPKIFKNALSSTLLVDIIKCLSSFFSEDMDLVVGYMEHLIKVPRFDMIIMCLSSTNKDDIRKIWDEVFRSEATPIEYAEILDNIRSKFCLGQ*	444

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu7g00437	443	MobiDBLite	consensus disorder prediction	238	280	-	-
	Lapu7g00437	443	ProSiteProfiles	TPR repeat profile.	136	169	IPR019734	GO:0005515
	Lapu7g00437	443	SUPERFAMILY	TPR-like	65	181	IPR011990	GO:0005515
	Lapu7g00437	443	SMART	tpr_5	136	169	IPR019734	GO:0005515
	Lapu7g00437	443	SMART	tpr_5	69	102	IPR019734	GO:0005515
	Lapu7g00437	443	SMART	tpr_5	103	135	IPR019734	GO:0005515
	Lapu7g00437	443	ProSiteProfiles	TPR repeat profile.	69	102	IPR019734	GO:0005515
	Lapu7g00437	443	Gene3D	Tetratricopeptide repeat domain	61	167	IPR011990	GO:0005515
	Lapu7g00437	443	Pfam	Potential Monad-binding region of RPAP3	319	408	IPR025986	-
	Lapu7g00437	443	MobiDBLite	consensus disorder prediction	17	45	-	-
	Lapu7g00437	443	MobiDBLite	consensus disorder prediction	259	280	-	-
	Lapu7g00437	443	Pfam	Tetratricopeptide repeat	104	132	IPR019734	GO:0005515
	Lapu7g00437	443	MobiDBLite	consensus disorder prediction	26	45	-	-
	Lapu7g00437	443	PANTHER	OS05G0129900 PROTEIN	1	442	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu7g00437	73	139	U-box Gene Family	AT3G07370	39.706	1.30e-08	54.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu7g00437	K23002		-	gmx:100784528	691.419

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu7g00437	7	5032560	5038074	Lapu7g00437	7	5032560	5038074	ECH