Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00424 ATGGGAAGCTCTAGCAGGAAGAAGAAGCAAGATCTGGAGTTAGAGAAAGTTCGCTTAATCAGTTTAGCCCTCGATTTCGGCTTCGACGAATCTTCCGCCAACAAATGTCTCGACCGTCTCATCGCTCTCTACGGGGAAGACGGTCGCGATTTCATCACCGTCGAGCACTGCGGTGACGATTTTCTCGCGACTCTAGCGGAGTCGATGCAGGCCACTGAAGATTGGGATGACCTTCAGGAAATGGAATCGCAAGCTTGCGGAGCTTTGTCGCACGTTCTCGACAAAGCCGTTGCCCCGGGTGCCGGTGCGGATAAGGACGACGCTTCGAGAAGCTTCGTTAATGTTGTTGGCGACTCGCCTCAACCGCAGAAACGCAAACCCCGCGCTAATGTAGTGGAGTTGGATTCGAGTGACGATGAGGATATGCACTGTAGTGTTCCGCGGGGAAAATCTGTGGATTACAGAAGTGGCATCACTCAATGCTCGGTTTCATCAACTTCCAGCAAAATACAATCCTCCTTTGCATCAAGTGATGAAAGTGGTACTCTCACTTATGAAGAATTGCAAGCACTAGATGATATTGAATTGGCCAATGTTGTTATCTTTGGTAATAGTACATTTCGACCATTGCAGCATCAAGCATGTAAAGTAGCTTTGGCAAAGCAAGATTCCTTTATTCTTATGCCTACTGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACTCTTCAACCGGGTGTTACTGTAGTTGTATCTCCATTACTCTCACTCATTCAGGATCAGATAATAACACTAAACCTCAAGTTTGGAATACCTGCAACTTTCTTAAACTCTCAACAGACTGCTTCCCAGGCCACAGCTGTGCTTCAAGAGCTAAGAAAAGACAAACCATCATGCAAGCTTTTATATGTGACACCTGAGAGAATTGCTGGCAACCAATCGTTTCTGGAGATTCTAAAGTGCATGCATCAGAAGGGACAGCTAGCAGGTTTTGTTGTTGACGAAGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGATTGGGATCACTTAAGCAACACTTTCCAGATGTACCCGTCATGGCATTGACTGCCACTGCAACCCATGCAGTTCGTGACATACTAAATGCGCTAAGAATTCCCCATGCACTTGTTCTTGAAAGAAGCTTTGACAGACCAAATTTAAAGTATGAAGTGATTGGTAAGACAAAGGAACCACTAAAGCAGCTTGGACAGCTACTAATTGATCGCTTCTGGAATCAGTGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTTGAGGTCTCTAAATTTTTGAATGAGAAATGCAAGATCAAAACAGTATATTACCATGCTGGCTTGGCTGCGCGGCAGAGAGTAGCTGTTCAAAAGAAATGGCATGACGGGGAGGTCCATATTGTATGTGCAACTATTGCTTTTGGCATGGGGATAGACAAACCTGATGTTCGCTTTGTCATCCACAATACCATGTCAAAATCAATTGAAAGCTATTATCAAGAATCTGGAAGGGCTGGAAGAGATAATCTTCCTTCTATTTGCATTGCTTTTTACCAGAAGAAGGATTTTAGTAGAGTTGTATGCATGATAAGAAATGGTCAGGGATATAAAAAGGAAAGTTTTAAGACGGCAATGGTTCAAGCCAAAAAGATGCAAGAGTACTGTGAAATAAAGGTTGAATGCCGGAGACAAACTTTACTCAAACACTTCGGGGAATCTTTTGATAGAAAAGCCTGCAAGTATGGATCTAGCCCCTGTGATAACTGTCTCAAGACTGTATTATGA 1824 0.4397 MGSSSRKKKQDLELEKVRLISLALDFGFDESSANKCLDRLIALYGEDGRDFITVEHCGDDFLATLAESMQATEDWDDLQEMESQACGALSHVLDKAVAPGAGADKDDASRSFVNVVGDSPQPQKRKPRANVVELDSSDDEDMHCSVPRGKSVDYRSGITQCSVSSTSSKIQSSFASSDESGTLTYEELQALDDIELANVVIFGNSTFRPLQHQACKVALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTASQATAVLQELRKDKPSCKLLYVTPERIAGNQSFLEILKCMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQHFPDVPVMALTATATHAVRDILNALRIPHALVLERSFDRPNLKYEVIGKTKEPLKQLGQLLIDRFWNQCGIVYCLSKSECVEVSKFLNEKCKIKTVYYHAGLAARQRVAVQKKWHDGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPSICIAFYQKKDFSRVVCMIRNGQGYKKESFKTAMVQAKKMQEYCEIKVECRRQTLLKHFGESFDRKACKYGSSPCDNCLKTVL* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00424 607 Pfam Helicase conserved C-terminal domain 419 521 IPR001650 -
Lapu7g00424 607 MobiDBLite consensus disorder prediction 128 148 - -
Lapu7g00424 607 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 330 339 IPR002464 -
Lapu7g00424 607 FunFam ATP-dependent DNA helicase 188 397 - -
Lapu7g00424 607 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 215 391 IPR014001 -
Lapu7g00424 607 Gene3D - 163 397 IPR027417 -
Lapu7g00424 607 SMART helicmild6 440 522 IPR001650 -
Lapu7g00424 607 SMART ultradead3 203 406 IPR014001 -
Lapu7g00424 607 CDD SF2_C_RecQ 398 531 - -
Lapu7g00424 607 Pfam DEAD/DEAH box helicase 209 379 IPR011545 GO:0003676|GO:0005524
Lapu7g00424 607 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 415 565 IPR001650 -
Lapu7g00424 607 NCBIfam RecQ family ATP-dependent DNA helicase 201 605 IPR004589 GO:0004386|GO:0006310
Lapu7g00424 607 Gene3D - 398 606 IPR027417 -
Lapu7g00424 607 MobiDBLite consensus disorder prediction 115 148 - -
Lapu7g00424 607 FunFam ATP-dependent DNA helicase 398 605 - -
Lapu7g00424 607 Pfam RecQ zinc-binding 534 603 IPR032284 -
Lapu7g00424 607 PANTHER DNA HELICASE RECQ FAMILY MEMBER 189 603 - -
Lapu7g00424 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 543 IPR027417 -
Lapu7g00424 607 CDD DEXHc_RecQ 201 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00424 Lapu-Chr7 4905437 4911735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00424 332 530 Eukaryotic Initiation Factors Gene Family AT5G11170 27.094 1.21e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00424 K10899 - gmx:100806070 1081.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00424 7 4905437 4911735 Lapu7g00424 7 4905437 4911735 ECH