Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00417 ATGGCGACGAGAAATCGCACTCTGCTTTTCAGAAAATACAGAGATGCGTTGAAGAGTGTTCGCGTTCCATCCATCTCTTCGCCGCAGTCCACCTCCTCCCGCGGTGGCGGTGGCCCCGTCATCGAATTGGTCAGCACCTCGCTTCTCAATTCCAATCGCTCTTACGCTCCGCTTAGTACCGATGATCCTGGCAATTCGAGTAGGGGTCCAAATGCAATCAATGTGGGGCTACCTCCCGCGTGGGTGGATTTATCGGAAGAAATATCAGCAAATGTGCAACGTGCACGGACAAAAATGGCAGAGTTGGCCAAGGCTCATGCAAAGGCTTTGATGCCGTCATTTGGAGATGGAAAAGAAGATCAACATGCTATCGAGACTCTAACACACGAGATAACTGACTTAATAAAGAGGTCGGAGAAGAGACTCCGGAGACTTTCTGCTTCTGGGCCTTCTGAGGATTCCAATGTCAGGAAAAACGTGCAGCGATCTCTTGCTACTGACCTTCAGAACCTCTCTGTTGAGCTACGCAAGAAACAATCAACTTATTTAAAGCGCCTCAGATTACAAAAAGAGGGTCAAGATGGAGTTGATCTAGAGATCAACTTAAATGGAGGTAAATCAAGATATGAAGATGATGATTTGGATAATATGGTATTTAATGAGCATCAAATGGCCAAGCTGAAAAATAGTGAAGCATTCACAGTAGAAAGAGAAAAAGAGATCCAGCAGGTTGTGGAATCTGTGAACGAGCTTGCTCAGATCATGAAGGATTTATCAGTACTTGTCATAGACCAGGGAACAATCGTCGATAGAATAGACTATAACATTCAGAATGTTGCAACCACAGTTGAGGATGGCCTTAAACAGCTGCAGAAGGCAGAGAGAACTCAGAAAAAGGGGGGTATGGTAATGTGTGCTACTGTGCTTGTCATCATGTGCTTCGTAATGTTGGTTCTCTTAATCATTAAGGAAATTATATTGTGA 984 0.4461 MATRNRTLLFRKYRDALKSVRVPSISSPQSTSSRGGGGPVIELVSTSLLNSNRSYAPLSTDDPGNSSRGPNAINVGLPPAWVDLSEEISANVQRARTKMAELAKAHAKALMPSFGDGKEDQHAIETLTHEITDLIKRSEKRLRRLSASGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTYLKRLRLQKEGQDGVDLEINLNGGKSRYEDDDLDNMVFNEHQMAKLKNSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLVIMCFVMLVLLIIKEIIL* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00417 327 Coils Coil 85 105 - -
Lapu7g00417 327 SMART tSNARE_6 226 293 IPR000727 -
Lapu7g00417 327 Gene3D - 78 285 - -
Lapu7g00417 327 MobiDBLite consensus disorder prediction 22 36 - -
Lapu7g00417 327 SUPERFAMILY t-snare proteins 77 286 IPR010989 GO:0016020|GO:0016192
Lapu7g00417 327 CDD SNARE_syntaxin16 236 292 - -
Lapu7g00417 327 ProSitePatterns Syntaxin / epimorphin family signature. 237 276 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lapu7g00417 327 FunFam Syntaxin-43 78 285 - -
Lapu7g00417 327 MobiDBLite consensus disorder prediction 21 41 - -
Lapu7g00417 327 SMART SynN_4 72 187 IPR006011 GO:0016020
Lapu7g00417 327 PANTHER SYNTAXIN 85 312 IPR045242 -
Lapu7g00417 327 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 231 293 IPR000727 -
Lapu7g00417 327 Pfam SNARE domain 267 319 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00417 Lapu-Chr7 4865819 4872492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00417 1 316 SNARE and Associated Proteins AT3G05710 77.160 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00417 K08489 - gmx:100796741 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00417 7 4865819 4872492 Lapu7g00417 7 4865819 4872492 ECH
Lapu6g00844 6 8663690 8668836 Lapu7g00417 7 4865819 4872492 ECH