Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00415 ATGGTTAGGGGAGGAAGGTTTAGTGGCAAACGCAATTTCAGAAAAAGGGTTCGGTCAAAGGAGGGAGGTTCCGATGATTCGGATGAGGACTATGTGGTTTCAGATGATGGTAGGGAGGCATCTGACTATTATTGCTCCTCCTTTGATGGATGTGCATCAGAGGAAAGTTTTGGTAGTTTTTTGGAAGAGGAGGAGGAGGAATTTCAAAGAGTGAGGAATTTGAATAGATCCAAGGCAAAAAAAGGTACTGCTAGTAGGCGGAAAAATGCCAGTAAAAACTCGCTCAAGAGGGGAAGGATTAAATATGCAGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAGGAAGAATACAAAGTGGAGGGGGAGGAGGAAATTCAAGAAGTGAGGAATTTCAATAGACCAAAGGCCAAAAATGGTGTACGCAGTAAGAAAAGAAGTGCAGGAAAAATCTCCCCAAAGAGGGGAAGGAAAATACACACAGAACAACTGGAAGAGGAGGAGGAAGAGGTCAAACTGGAGGAGGAAGAGGATAAGGTGGATGGAGGTGGAGATGAGGAAGAAGAGGAGGGAGATAGAGATGGAGAGGATGAAGATTTTGACTATGAGGATGAGGATGATGAGTTTTTGCCTGAGGAAGAAGATTATTCAGATGAGGAAGAAGAAACAAGAGGGAGAAAGAAGAATAATGATGGCATGAAAATGGACAAGAAGGTTTTGCAGAAGAAAAGGTCCTCTGTAGTTTCGACTAGAAGTAGAAAAAGGCAGAGTTCTAGAGCTTCAAAGAAGCCCTTGAGAAACAAAAGAAGAAAGAATGGGAGGTTAAGGAAGAAAGTAAGATGTGAAGATGAAGATGAAGATGATTTTATAGATAATAGCCCAACCCTGAGGACAAGTGGGAGAAAACGGGGCCAGAAGAGAAAAAGGGTGTTTCTTTCAGATTCAGAATATCCATCTTCTGGATCGTCTGATTTTGAGTTTACCATATCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCCAAGAAACTGTGCAGCGATTTGAGGAATAACTTGAGGAGTTCATCCCATCTAATAAACAATGAAGAGGTTCCTGTCCATGAGGAACAAATTCAGTTGCGGAAACCACCAGGTCGGAAGGGCAAGGAAAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGGATTTAAAAAGTGAGATGGGTAAGCAAGTGTGTGGGATTTGTCTATCCGAAGAAGATAAAAGAAGAGTCAGGGGAGTACTAAATTGTTGCACTCACTTCTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGATGCCCCTTGTGTAAGCAGAGATTCAAAACAATCAGCAAGCCTGCACGGTCTACCACAGGGATTGATTTAAGAGAAGTGGTGATACAAGTCCCTGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCCTATGAATATGTTATTTGTTCAGAGTGTCACCAAGGTGGAGATGATGGCCTCATGCTACTATGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGCTGTAGACCAGTGGCTCTGGGATCTTCAAGCTCCCAAGTTCAAGAAGGTGCGGCTGATCCAAGGGTGACAATCCAGAACCTTCCTGTTAGAACACCTCCTGCTCTACATGTACGAGAAAGTATAGACCTGAACTTGATTTCGTCACCCCGTGCAACTTTTAATCAAGGTTTTGGGCATCTTCCATCTTCTAGATTTAGTGGCAGAAGTGTTGAAGGATCTTCTCCTGTATCTGGAGGGGCGCCAACTTTATCAGAGAGACGCTGGATACACCGGCAAATTCAACAATTACTTTCAATAGATAGGATGACTTCTACACCTGGCAGAACCACCAACGGTATTTCAGCTACCAGTTCAACTAGTAACTTGTATAGCTCTCAAATTGATCAAAGTAGGGGAACCACCACTGTTCATGCAAGGACACAGGATGTGGGAACATCATACCACACATTTTTTGATGACAGATTATGCAACAATACCTCTCCATTATTGCCGAATGGGGCATTATGGCCTGGACTTATGGGGACACCCCCAGTACCAGATTGTGAACAAGTTCATCAGTTCAGCAGATCAAACATTGTCCCTGATGATGGCTTATCCCCTGCTGTCAGAGAAGAGAGTAACTTTCACATTGCGAAGGAGCAGTTGCAGTCGATGGTTAAAAGTCACCTGAAGAGCTTGTCTCAAAATATTGATTTAGGCCACAGCACTTTCAAGGATATTGCAAGGAGTTCTATGCACACCATACTGGCAGCTTGTGATCTTGAGCACAAGAACAGTGAAGTTTGCAATGTGCCTCCTCCATCTGCCTGTCCGCACATGGAACTAATGGCTGGCGGGCCATCGAGTCTGATTAAAGGTTGCTGCTCATCGTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGGTTTTGGACACAAGATTTTCGTCCCAGTGGTTACGATTAGGTCTATAG 2583 0.4394 MVRGGRFSGKRNFRKRVRSKEGGSDDSDEDYVVSDDGREASDYYCSSFDGCASEESFGSFLEEEEEEFQRVRNLNRSKAKKGTASRRKNASKNSLKRGRIKYAEEEEEEEEEEEEEEYKVEGEEEIQEVRNFNRPKAKNGVRSKKRSAGKISPKRGRKIHTEQLEEEEEEVKLEEEEDKVDGGGDEEEEEGDRDGEDEDFDYEDEDDEFLPEEEDYSDEEEETRGRKKNNDGMKMDKKVLQKKRSSVVSTRSRKRQSSRASKKPLRNKRRKNGRLRKKVRCEDEDEDDFIDNSPTLRTSGRKRGQKRKRVFLSDSEYPSSGSSDFEFTISEEEREQVREAKKLCSDLRNNLRSSSHLINNEEVPVHEEQIQLRKPPGRKGKEKIEEPQGRKGKEKVEDLKSEMGKQVCGICLSEEDKRRVRGVLNCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGAADPRVTIQNLPVRTPPALHVRESIDLNLISSPRATFNQGFGHLPSSRFSGRSVEGSSPVSGGAPTLSERRWIHRQIQQLLSIDRMTSTPGRTTNGISATSSTSNLYSSQIDQSRGTTTVHARTQDVGTSYHTFFDDRLCNNTSPLLPNGALWPGLMGTPPVPDCEQVHQFSRSNIVPDDGLSPAVREESNFHIAKEQLQSMVKSHLKSLSQNIDLGHSTFKDIARSSMHTILAACDLEHKNSEVCNVPPPSACPHMELMAGGPSSLIKGCCSSCFDSFVGDVVKRVLDTRFSSQWLRLGL* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00415 860 Coils Coil 330 350 - -
Lapu7g00415 860 MobiDBLite consensus disorder prediction 75 95 - -
Lapu7g00415 860 Coils Coil 61 81 - -
Lapu7g00415 860 MobiDBLite consensus disorder prediction 220 243 - -
Lapu7g00415 860 MobiDBLite consensus disorder prediction 167 219 - -
Lapu7g00415 860 MobiDBLite consensus disorder prediction 646 679 - -
Lapu7g00415 860 ProSitePatterns Zinc finger RING-type signature. 427 436 IPR017907 -
Lapu7g00415 860 MobiDBLite consensus disorder prediction 137 154 - -
Lapu7g00415 860 MobiDBLite consensus disorder prediction 358 397 - -
Lapu7g00415 860 ProSiteProfiles Zinc finger RING-type profile. 408 450 IPR001841 -
Lapu7g00415 860 CDD RING-HC_Topors 406 453 - -
Lapu7g00415 860 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 548 IPR013083 -
Lapu7g00415 860 MobiDBLite consensus disorder prediction 71 328 - -
Lapu7g00415 860 MobiDBLite consensus disorder prediction 105 122 - -
Lapu7g00415 860 Pfam PHD-finger 500 546 IPR019787 -
Lapu7g00415 860 Coils Coil 157 179 - -
Lapu7g00415 860 MobiDBLite consensus disorder prediction 247 276 - -
Lapu7g00415 860 PANTHER F18C1.6 PROTEIN 154 849 - -
Lapu7g00415 860 SMART ring_2 408 449 IPR001841 -
Lapu7g00415 860 SMART PHD_3 500 545 IPR001965 -
Lapu7g00415 860 SUPERFAMILY FYVE/PHD zinc finger 470 546 IPR011011 -
Lapu7g00415 860 MobiDBLite consensus disorder prediction 361 397 - -
Lapu7g00415 860 MobiDBLite consensus disorder prediction 1 36 - -
Lapu7g00415 860 Pfam Ring finger domain 407 450 IPR001841 -
Lapu7g00415 860 ProSiteProfiles Zinc finger PHD-type profile. 498 547 IPR019787 -
Lapu7g00415 860 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 471 IPR013083 -
Lapu7g00415 860 SUPERFAMILY RING/U-box 407 456 - -
Lapu7g00415 860 Coils Coil 95 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00415 Lapu-Chr7 4852484 4856457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00415 495 544 C2H2 Transcription Factor Family AT3G01460 46.154 2.40e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu7g00415 PHD 4.4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00415 - - vun:114191996 1366.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00415 7 4852484 4856457 Lapu7g00415 7 4852484 4856457 ECH