Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00400 ATGACCGGGGAAGATGGAGGAAGCAAGAGGAGAATCGTTATCATTGGCGTCTCTACCATCTTCCTGGTGGCTATGGTCATTGCCGTCGCATTTTATTCCGTCAACTACGATTCGGACGGTTCCGCCAGTGACAGACAACAGAAAAACAAAGTTATTTCCTCTGTGAAAGCGGTGAAAATCCTTTGTAAACCCACATATTACCAGAAAGAATGTGAGAAAAGCCTGACAAAAGAGGCTGAAAACATCACGGACTCCAGAGAACTCGTTAAAATTGCATTCAATGTAACCATGAAGAAAATAGGTAAAGGACTAAAAAAAATGGATCTCATGCGCGACGTTGAGAGTGACCCCAGAGCCAAGATGGCACTTGCAACATGCAAGCAACTCATGGATCTTTCCACTGGGGAATTCAAGAGGGCAATTGAGAAAATGGGCAAGTTTGATCTCAACAATATCAACAACATTCTCACTAGTTTGAAAGTTTGGCTTAGCGGTGCAATCACGTATCAAGAGACTTGCTTGGATGGCTTCAATAACTCCCCCAAAGAAGCAGGGAAGAAGATGAAGAGATTGTTGACCACCAGCATGCAGATGAGCAGCAACGCCCTTGCCATCGTCTCAGCACTTGCAAATACTGTCTCGGTAATGAATGACACGACAGTTGCGGGTCGTCAGCTTGTTGAGAGTGACGAACATGTTTCTGGTCACGGTGAGGTTATTCCCTCGTGGGTTGCTGCTGATGATGGTGGTGGTTTTCGTAGACTCCTTCATGAAAGTCCCCACAAACTCAAGGCTAATGCGGTTGTGGCCAAAGATGGTAGTGAAAAGTTCAAAAGCATCACCCAGGCACTGAAGAAGGTGCCTAAGAAGAACAAAAAGCCATTCGTGATTTACATTAGGGAGGGTGTTTATGATGAGTATGTTGAAGTCACTAAAACGATGCCTCGCGTGGTGTTTGTCGGTGATGGTGCCAATAAGACACGAATCACAGGCAACAAAAACTTCATAGATGGGATTAATACTTACAGAACCGCCTCAGTTGGGTTTGAGAATTCCGCTGGTCCCCACAAACATCAAGCAGTAGCCATAAGGGTCCAAGCAGACAAATCCATTTTCTATAGATGCTCAATGGATGGATATGAGGACACTTTGTATGTTCATGCCATGCGCCAATTTTATCGGGATTGCACCATTTCAGGCACTATCGACTTTGTCTTCGGTGATGCAGTGGCTGTTTTTCAAAACTGCACTTTCGTGGTAAGAAAGCCATTGGAGAACCAACAATTAGTTGTGACAGCACAAGGTAGAATGGAGAGTCACCAACCATCAGGAATAGTGATCCAAGGAAGCTCCATTGTGTCTAATCATACAGTGAAGTTTAATAACAAGGCATACCTAGCTCGTCCATGGAAGAATTACTCCAGGACCATCTTCATGAACACTTACATTGAGGATTTTATTGAACCTAATGGGTATGTGCCGTGGCAAGGACCGCGGGGTCCTTCAGGTATGAACACTTGTTTCTATGCCGAGTACAATAACACTGGTCCAGGTTCAGACAAATCCAAGCGTGTAAAATGGCGCGGGATCAAGAAACTCAATTCAGTATCCGCAAGAAGTTACTCGCCAATAAATTTTTTTCATGGAGATGACTGGATTAAAATCACTAGGATTCCTTACTACTCTGCCACCCACCCCAAGCACTGA 1707 0.4452 MTGEDGGSKRRIVIIGVSTIFLVAMVIAVAFYSVNYDSDGSASDRQQKNKVISSVKAVKILCKPTYYQKECEKSLTKEAENITDSRELVKIAFNVTMKKIGKGLKKMDLMRDVESDPRAKMALATCKQLMDLSTGEFKRAIEKMGKFDLNNINNILTSLKVWLSGAITYQETCLDGFNNSPKEAGKKMKRLLTTSMQMSSNALAIVSALANTVSVMNDTTVAGRQLVESDEHVSGHGEVIPSWVAADDGGGFRRLLHESPHKLKANAVVAKDGSEKFKSITQALKKVPKKNKKPFVIYIREGVYDEYVEVTKTMPRVVFVGDGANKTRITGNKNFIDGINTYRTASVGFENSAGPHKHQAVAIRVQADKSIFYRCSMDGYEDTLYVHAMRQFYRDCTISGTIDFVFGDAVAVFQNCTFVVRKPLENQQLVVTAQGRMESHQPSGIVIQGSSIVSNHTVKFNNKAYLARPWKNYSRTIFMNTYIEDFIEPNGYVPWQGPRGPSGMNTCFYAEYNNTGPGSDKSKRVKWRGIKKLNSVSARSYSPINFFHGDDWIKITRIPYYSATHPKH* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00400 568 PANTHER PECTINESTERASE 21 554 - -
Lapu7g00400 568 Pfam Plant invertase/pectin methylesterase inhibitor 57 205 IPR006501 GO:0004857
Lapu7g00400 568 SMART PMEI_2 53 205 IPR006501 GO:0004857
Lapu7g00400 568 NCBIfam pectinesterase inhibitor domain 54 209 IPR006501 GO:0004857
Lapu7g00400 568 FunFam Pectinesterase 54 210 - -
Lapu7g00400 568 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Lapu7g00400 568 Pfam Pectinesterase 266 550 IPR000070 GO:0030599|GO:0042545
Lapu7g00400 568 CDD PMEI-like_3 61 211 - -
Lapu7g00400 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 211 IPR035513 -
Lapu7g00400 568 SUPERFAMILY Pectin lyase-like 264 561 IPR011050 -
Lapu7g00400 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 209 IPR035513 -
Lapu7g00400 568 Gene3D - 263 565 IPR012334 -
Lapu7g00400 568 FunFam Pectinesterase 4 263 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00400 Lapu-Chr7 4727144 4729056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00400 9 560 Carbohydrate Esterase AT3G05610 47.452 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00400 K01051 - gmx:100810853 818.92