Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00383 ATGGGAAGGAATGCGATGGATTCGAACGACACATGTTGGGACCAAGTCATTGCAGAAATGATTGGAATGGGTTTTGAGTATTCCAACATCATCGAAGCCATAAAAGTAGTGGGTCCATCTACTCCCAGCGCCGTGGAACACATCCTCAATTCTACAACTGGAGAACCATCCACTACCCACAACTCCAATTCGCATGCACGCAATGGGAATTCTCTCAAAAAACCACCTTTGCGCACGTGCCGTCAAGTTCGACAGTCCAAGATATTCCACCATTTCCACTCCAATGATGATGTCAAAAAACACAAGGAGGAACTCCCTCAATTGGGAATTGATCCCAATCCCGTTGTGCTTTCAGAGCCTTTTGAAGCGCGAGATATGGATGCTGTATCTGATTGGGAGCAGAAAGTTAGAAATTTGATGAAAAAGCATTTTGGTTTTTCATCCTTGAAGAGTTTTCAGAAGGAAGCCCTCTCTGCCTGGGTTGCTCATAAAGACTGTCTTGTCCTCGCTGCAACAGGATCCGGGAAATCTCTGTGCTTTCAGATTCCTGCATTGTTGTCTGGGAAAGTGGTGGTTGTGATTTCCCCCTTGATAAGCCTCATGCATGACCAGTGTTTAAAGCTAACTAGACATGGGATCAGTTCGTGCTTTCTTGGCTCCGGGCAACCAGATAATACCACTGAACAAAAAGCCATGAGAGGATTGTATAGTATAGTGTATATTTGCCCAGAGACTGTCCTAAGATTGATTCAACCACTGCAGAAGCTTGCAGAAAGTCGTGGTATTGCTTTATTTGCAATTGATGAGGTACACTGTGTTTCGAAATGGGGTCACGATTTCCGTCCAGATTACAGGCGACTGTCTGTGCTGAGAGAAAATTTTAGTACTAGCAAGCTAAAATCCTTAAAATTTGATATACCTCTGATGGCCTTGACAGCTACAGCCACAAAAAGAGTTCGAGAAGACATTTTAAAATCATTACACATGTCAAAAGAAACGAAAGTTTTTCTTACATCATTTTTTCGATCTAATTTGCGCTTCATGGTAAAGAATAGTCGAGCATCACAGGCTTCTTATGCAAAAGATTTTCATGAATTGATTCAAGTATATGGTAGAAAGAAAAATATTGATGGAAATGAAAAGGTTTTCACCTCAGATGATTCATATCAGGTTTCTAATAGCTCCGATGCTAGTAGTATCTCTGATACTGACAGTATTTCACCTGATGACATGGATGATAACCAAGATGATTATGCTTATAGAGATATTAATATAATGCACTCAGGAAACACAGATGATTCTTTAGCGGGAAAAGAATTGTCAATTGAGTTCCTCGAAAATGATATCGATGACTTTCAAAGTGTGGATAACTTAGATGTTACCCATGGTGAATTTTGTGTACTACCTCACAAGGAATTGGAATTATCTGAGACAACTGACCCACCTAAGAAACCGAAAGGAAGACTTAAAATTCTTAAAGAGCCTTTGGATCAAGGACCAACAATCATATATGTACGCACCAGAAAAGAAACTCTGAGAATAGCAAAGTACCTATGCAAGTTTGGTGTGAAGGCTGCTGCTTATAATGCAGGGCTTCCCAAATTGCATCTAAGAAGGGTTCATAAAGAGTTTCATGAAAATAATTTAGAGGTTATAGTTGCTACAATAGCTTTTGGAATGGGGATTGACAAATCAAATGTCAGAAGAATCATCCACTATGGTTGGCCACAGAGTTTAGAAGCATACTACCAAGAAGCTGGACGAGCTGGTCGAGACGGGAAATTAGCTGATTGCATTCTGTATGCAAACCTAGCAAGCAAGCCATCACTTTTGCCTAGTCGAAAAAGTGAAGATCAGAAAAAACAGGCATATATTATGTTGTCTGACTGTTTCAGATACGGAATGAATACTTCCTGCTGTCGAGCAAGGATACTCGTTGAATATTTTGGAGAGGATTTCATTCATCAGAAATGTCTCTTATGTGATGTGTGCATTGATGGTCCACCTCAAAAGCAGAATCTAAAAGAGGAGGCCTGTATTTTACTGCAAACTATAGGTGCCCATAATGGATGTAGGGATTCCATGGATTGCTCATATGACGATGATATACATTTTGACTCCAATTTCAGAGGACCAAGAGAGAGGTCAAATCTTAAGATGTTGGTTGGAAAAATAAGGCAGCAGTTTCAAAAGTTTTCAACCACTGATATATTATGGTGGAGAGGTCTTGCCCGAATTTTGGAAGTTAAAGGATACATCAGAGAAGGAGATGATAAGACCCATGTTCAGGCAAAATACCCGGAGCCAACAGTATTGGGATTGGAATTTGTGAAGTCCATGATTGAGGAAGCTTTCTATGTTTACCCTGAGGCAGATATGTTGCTTGCAAGAAAATTAATTAACAAACCATTTTCCTCATTCTCGGAATGGGGAAATGGTTGGGCTGATCCTGAGATCCGTCGACAGCGCCTAGAAAGAATGGGAGTTAATAGAAAGTCAGAGATGCCGTCAAGTTCCAAAAGGAAACGAAAGAGAAAAGGTGGAAAAGTGCAACCTGATTTGAGGACTTCTCGAGGCAGACTAGCAGCAAAACTCTCAAAATATAAGTGA 2610 0.4046 MGRNAMDSNDTCWDQVIAEMIGMGFEYSNIIEAIKVVGPSTPSAVEHILNSTTGEPSTTHNSNSHARNGNSLKKPPLRTCRQVRQSKIFHHFHSNDDVKKHKEELPQLGIDPNPVVLSEPFEARDMDAVSDWEQKVRNLMKKHFGFSSLKSFQKEALSAWVAHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLKLTRHGISSCFLGSGQPDNTTEQKAMRGLYSIVYICPETVLRLIQPLQKLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFSTSKLKSLKFDIPLMALTATATKRVREDILKSLHMSKETKVFLTSFFRSNLRFMVKNSRASQASYAKDFHELIQVYGRKKNIDGNEKVFTSDDSYQVSNSSDASSISDTDSISPDDMDDNQDDYAYRDINIMHSGNTDDSLAGKELSIEFLENDIDDFQSVDNLDVTHGEFCVLPHKELELSETTDPPKKPKGRLKILKEPLDQGPTIIYVRTRKETLRIAKYLCKFGVKAAAYNAGLPKLHLRRVHKEFHENNLEVIVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLASKPSLLPSRKSEDQKKQAYIMLSDCFRYGMNTSCCRARILVEYFGEDFIHQKCLLCDVCIDGPPQKQNLKEEACILLQTIGAHNGCRDSMDCSYDDDIHFDSNFRGPRERSNLKMLVGKIRQQFQKFSTTDILWWRGLARILEVKGYIREGDDKTHVQAKYPEPTVLGLEFVKSMIEEAFYVYPEADMLLARKLINKPFSSFSEWGNGWADPEIRRQRLERMGVNRKSEMPSSSKRKRKRKGGKVQPDLRTSRGRLAAKLSKYK* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00383 869 FunFam ATP-dependent DNA helicase 474 602 - -
Lapu7g00383 869 Gene3D - 605 776 IPR036388 -
Lapu7g00383 869 FunFam ATP-dependent DNA helicase 118 341 - -
Lapu7g00383 869 SMART ultradead3 145 350 IPR014001 -
Lapu7g00383 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 213 IPR027417 -
Lapu7g00383 869 MobiDBLite consensus disorder prediction 50 76 - -
Lapu7g00383 869 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 333 IPR014001 -
Lapu7g00383 869 PANTHER DNA HELICASE RECQ FAMILY MEMBER 130 724 - -
Lapu7g00383 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 604 IPR027417 -
Lapu7g00383 869 Gene3D - 471 602 IPR027417 -
Lapu7g00383 869 Pfam DEAD/DEAH box helicase 152 319 IPR011545 GO:0003676|GO:0005524
Lapu7g00383 869 MobiDBLite consensus disorder prediction 387 405 - -
Lapu7g00383 869 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 51 IPR015940 -
Lapu7g00383 869 NCBIfam RecQ family ATP-dependent DNA helicase 139 368 IPR004589 GO:0004386|GO:0006310
Lapu7g00383 869 FunFam ATP-dependent DNA helicase 604 782 - -
Lapu7g00383 869 SMART helicmild6 512 593 IPR001650 -
Lapu7g00383 869 Pfam RecQ zinc-binding 614 664 IPR032284 -
Lapu7g00383 869 Pfam Helicase conserved C-terminal domain 489 592 IPR001650 -
Lapu7g00383 869 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 488 646 IPR001650 -
Lapu7g00383 869 Gene3D - 118 341 IPR027417 -
Lapu7g00383 869 MobiDBLite consensus disorder prediction 387 414 - -
Lapu7g00383 869 CDD DEXHc_RecQ 137 340 - -
Lapu7g00383 869 MobiDBLite consensus disorder prediction 825 869 - -
Lapu7g00383 869 MobiDBLite consensus disorder prediction 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00383 Lapu-Chr7 4584544 4590670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00383 488 611 Eukaryotic Initiation Factors Gene Family AT5G11170 28.226 4.25e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00383 K10900 - gmx:100793222 1394.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00383 7 4584544 4590670 Lapu7g00383 7 4584544 4590670 ECH