Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00380 ATGGCGGAAGCCAAGTTGAAAGAACCCGAGGACCAAAGCTTCGAAGAGCTCGGCGTGGAAGCTTCTCTCCTTCGCGCCTTACACAAGAAAGGGATCGAGAAACCCACTCCAATTCAGGGCGTCGCAATTCCACTCATTCTGGAAGGTAAGGACGTGGTTGCTCGCGCCAAAACAGGTTCCGGAAAGACCTTAGCGTATCTTCTCCCGTTGCTTCAGAAACTGTTTACCGTTAGTGCTGATCGGAAGAAGCTCGCGCCCAATGCTTTTGTTCTTGTCCCTACTCGCGAACTGTGTCAACAGGTGTATGCGGAAGTGTTGTCGCTGGTTGAGTTGTGCAGAGTTAAACTGAAAGTTGTGCAGCTGAATAGCAACATGCTTGCTAATGACTTGCGGGCAGCTTTGGCTGGACCTCCTGATATTTTGATCTCCACTCCTGCTTGCGTAGCGAAGTGTTTGTCCGGTGGCATACTTAAGCCGGCATCCGTTGGCGAATCGCTTGAAACTCTTGTTCTTGATGAGGCAGATCTTCTACTATCATATGGGTATGAAAATGATCTAAAAGCTTTTACACCGCATGTTCCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGCGGATGTTGACAAACTAAAGAAGTTGATTCTGCACAACCCATTTATTTTGACTTTGCCTGAAGTGGGAAATAATAAGGATGAGATCATTCCTAAAAATGTTCAGCAGTTCTGGATCTCATGTTCTGCCAGTGACAAGTTACTTTACGTCCTTGCTGTTTTGAAGTTGGGGTTGGTCCAAAAGAAAGTTCTGATATTCACTAATACTATAGACATGAGTTTCAGATTGAAACTATTCTTGGAAAAGTTTGGGATCAGATCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCCCGTCTCCATATTCTGGAGGAATTCAATGCGGGCCTATTTGATTATCTAATTGCAACAGATCTTAGTCAGTCAAAGGAAAAGGATGAAGTGTCTAAGGAAAGTAATGTTGTATCACAGAAGTCTAGAAAACGTGCTAAAGTAAAATTAGATTCTGAATTCGGAGTTGTAAGGGGAATTGACTTCAAAAATGTATTCACGGTTATAAACTTTGAAATGCCTCAAAATGTTGAGGGATATGTACATAGAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTGGTTTCTCCGGATGAGATGGATACTTTAGAAAAAATAAGATCTTTTGTTGGGGATGATGAAAACCAAGGCACTAGTTCCATTGCCGAGTTTCCCCTCCTCTCCAAGAATGCAGTTGAATCTTTACGGTATAGGGCAGAGGATGTTGCAAAGAGTGTAACTAGAATTGCCGTCCGAGAGTCACGAGCCCAGGATTTAAGGAATGAAATTTTGAACTCTGAAAAGTTGAAAGCCCATTTTGAGACTAACCCAAGAGACCTAGATCTACTGAAGCATGACAAAGTTTTGAGCAAGAATGCCCCACCTCCGCACCTACGTGATGTGCCTGACTACCTATTAGACAAACCAACGAAAGAGGCAAGGGAAATGGTCAAGCTTGCGAGGGATGCAATGGGAAATAATAATCGCCGCAAAGGATCCAAGAGAAAATTAAGAAAAGATGGAGACCCTCTGAAAGCTATCTCGGCTTTGGCTTCAAAAAGACCGCACAAAGTTAGGAAGACTGGTGGAAGCGATGGAAACAATAACAATGATAAACATAAACGCAGAAAGAATAAGGAGGGTATTTGA 1776 0.4313 MAEAKLKEPEDQSFEELGVEASLLRALHKKGIEKPTPIQGVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFTVSADRKKLAPNAFVLVPTRELCQQVYAEVLSLVELCRVKLKVVQLNSNMLANDLRAALAGPPDILISTPACVAKCLSGGILKPASVGESLETLVLDEADLLLSYGYENDLKAFTPHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNNKDEIIPKNVQQFWISCSASDKLLYVLAVLKLGLVQKKVLIFTNTIDMSFRLKLFLEKFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEVSKESNVVSQKSRKRAKVKLDSEFGVVRGIDFKNVFTVINFEMPQNVEGYVHRIGRTGRAYNSGASVSLVSPDEMDTLEKIRSFVGDDENQGTSSIAEFPLLSKNAVESLRYRAEDVAKSVTRIAVRESRAQDLRNEILNSEKLKAHFETNPRDLDLLKHDKVLSKNAPPPHLRDVPDYLLDKPTKEAREMVKLARDAMGNNNRRKGSKRKLRKDGDPLKAISALASKRPHKVRKTGGSDGNNNNDKHKRRKNKEGI* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00380 591 MobiDBLite consensus disorder prediction 531 591 - -
Lapu7g00380 591 Pfam Helicase conserved C-terminal domain 252 395 IPR001650 -
Lapu7g00380 591 Gene3D - 229 434 IPR027417 -
Lapu7g00380 591 Gene3D - 2 226 IPR027417 -
Lapu7g00380 591 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 43 224 IPR014001 -
Lapu7g00380 591 CDD SF2_C_DEAD 241 404 - -
Lapu7g00380 591 CDD DEADc_DDX56 23 226 - -
Lapu7g00380 591 Coils Coil 465 485 - -
Lapu7g00380 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 225 IPR027417 -
Lapu7g00380 591 MobiDBLite consensus disorder prediction 567 591 - -
Lapu7g00380 591 SMART ultradead3 31 244 IPR014001 -
Lapu7g00380 591 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 259 441 IPR001650 -
Lapu7g00380 591 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 12 40 IPR014014 GO:0003724
Lapu7g00380 591 PANTHER RNA HELICASE 8 535 - -
Lapu7g00380 591 SMART helicmild6 281 395 IPR001650 -
Lapu7g00380 591 Pfam DEAD/DEAH box helicase 36 213 IPR011545 GO:0003676|GO:0005524
Lapu7g00380 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 420 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00380 Lapu-Chr7 4563011 4571113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00380 13 435 Eukaryotic Initiation Factors Gene Family AT3G19760 25.532 2.63e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00380 K14810 - gmx:100800749 1012.29