Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00379 ATGGATCACGCGCGATCGACCAACGGCGAGGACAATGCGGCGGGAATTCCGGACGACTTGCGGTGCAAGAGGTCTGACGGAAAGCAGTGGAGGTGCACGGCCATGTCGATGCCGGACAAGACGGTGTGCGAGAAGCACTACATCCAGGCCAAGAAGCGCGCCGCGAATTCAGCAATGAGGGCTAACCTGAAGAAAGCCAAGAGGAAGTCGCAATCGCTGAACGAGTCTGATGTTTACTTGGAGAGTAAGAGCGACGATTTCGACGTTCCTCTCTCTACTATAAGCCTTTCGCAGAAGAAGCTCTCGAAGAACCAGTTTCGTTACACGCCCGAGCGGGACGTGCGAAGAGCCTCGTCTGCGAGACACGTTCATGACGATGTGGATGTGGATGTGGACGCGGATGTGGATGCGGATGTGGATGTGGATGCGGATGCGGATGCTGATGTGGCGCTCTATGAAGAAGACAATTGGGTCTCCTTTGATTCCCCGCCGGACTCCTCGCGCAAGAGATCGCGGAGGAGCTTGGATGCTAATGCGACGACTGAATATTCCGACGGAACCTCTGGTTCTTCTGAAGATACCGGCGGGCAGACTTGTCATCAGTGCAGGAGGAATGACCGAGATAGAGTTACTTGGTGCTTAAAATGTGACAGGAGGGGATACTGTGATGGCTGTATATCAGCATGGTACTCGGACATTTCATTGGATGAAATTCAGAGGATATGTCCTGCTTGCCGTGGTATATGTAATTGCAAGACTTGCTTGCGGAGTGATAATTCTATCAAGGTTCGGATACGCGAGATACCTGTTCTGGATAAGTTACAGTATCTCCATGTGTTGCTATCATCTGTGCTTCCTGTGGTAAAGCAGATTCACCGTGAACAGTGTTATGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCGAGAATAAAATTCAACACAGATGAGCAGATGTGCTGCAATTTCTGTAGGATACCTATTACTGACTATCATCGACGATGTCCAAATTGCTCGTATGATTTGTGCCTTAGTTGCTGTCGAGATCTTCGAGACGCAACTGCAGATCGCAATAAAGAACCCCAGACAGATCTAGCTAAAACTTGTGATCAAAATATATTAAGTAAATTTTCTCATTGGAGATCCAATGACAATGGAAGTATTCCATGTCCCCCTAAGGAGTATGGTGGCTGTGGTCATTCTTCATTAAACTTAAGCAGAATTTTCAAGATGAATTGGGTAGCAAAGTTGGTGAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTGGTAATGCCGATGGTCCACCAGAATCTGGGCTGAATGATCCTAGACTCTGTCACTATTCTCATAGAGAAGCCAGTGATGATAATTATCTTTATTGTCCAGCATCTGAAGATATCAAAACTGACGGGATTGAAAATTTTAGAAAGCACTGGAAAACTGGTGAGCCCATTATTGTTAGGCAAGTATTTGATGCATCATCCATTTCGAGCTGGGATCCAATGGTCATATGGAGGGCAATTCTAGAGACAACAGATGAGAAAGCAAAAGATGAAAACAGGACAGTTAAGGCCATAGATTGCTTCGATGGATCTGAGATTGATATTGAGCTTGCTCAGTTCATGAAAGGATATTCGGAAGGGCATATTCATGAAAATGGTTGGCCACAGTTATTGAAATTGAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTCTACTCTACCAAAGACCTGAGTTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTCAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGACGTAGGACCCAAGATATATATAGCTTATGGCATTAGTGATGAACTTGGAAGAGGTGATTCAGTGACCAATCTCCACTTCAATATTCGTGACATGGTGTACCTTTTGGTTCATACAAATGAAGTAAAGTTGAAGGACTGGCAGAGAACTAAAATTGAAATTATGCAAAAAACTAAAGTTTATGAGGAATCTGAGACAAAAGAGTCACAAAGGGATCTTCAAATATTTTCAAGGGGCAGTTCAGTTGATTCATCACTTGGTACAAAATGTAGTGGACTGGATATGGATTCAAACCAAGATAAGTCAGTTATGGATAAAGGATTTAAAATTTATTCTAGTGCTGAAGGTAATATGATCAATTGTAAACTCCCATCTACACAAAATGGAGATGTCTCTGAGAAATCACATCCTGGAGTTCTTTGGGATGTTTTTCGTCGGCAGGATGTTCCAGTGTTGACTAAATATTTGAAAATACATTGGAAGGAATTGGTGAAGTCAGATGATGCAGGAAATGAATTTGTTGCATGGCCTCTTTATGGTGGCGCTATTTTTCTTGACAAACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAATCCAATGTCCAGCTGGGCCTTGATTTCTTATCCCCGGAAAGCCTGGGGGATGCTGTAAGATTGACAGAGGAAATTCGCTGTCTACCGAATGAACATGAATCAAAGGTTCAAGTATTGGAGGTTGGAAAGATATCTCTCTACGCAGCAAGTTCAGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCAAAAACTTGGCGCCGAGATTGGATATGGAGATCCTAATTTGACTGCAATGGTTTCTGAGAATTATGAGAAGATGATTAAGCGGAGGCAGATTACTTGTGCTTGA 2817 0.4338 MDHARSTNGEDNAAGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSQSLNESDVYLESKSDDFDVPLSTISLSQKKLSKNQFRYTPERDVRRASSARHVHDDVDVDVDADVDADVDVDADADADVALYEEDNWVSFDSPPDSSRKRSRRSLDANATTEYSDGTSGSSEDTGGQTCHQCRRNDRDRVTWCLKCDRRGYCDGCISAWYSDISLDEIQRICPACRGICNCKTCLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHREQCYEVELEKKLRGAEIDLPRIKFNTDEQMCCNFCRIPITDYHRRCPNCSYDLCLSCCRDLRDATADRNKEPQTDLAKTCDQNILSKFSHWRSNDNGSIPCPPKEYGGCGHSSLNLSRIFKMNWVAKLVKNVEEMVSGCRIGNADGPPESGLNDPRLCHYSHREASDDNYLYCPASEDIKTDGIENFRKHWKTGEPIIVRQVFDASSISSWDPMVIWRAILETTDEKAKDENRTVKAIDCFDGSEIDIELAQFMKGYSEGHIHENGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYIAYGISDELGRGDSVTNLHFNIRDMVYLLVHTNEVKLKDWQRTKIEIMQKTKVYEESETKESQRDLQIFSRGSSVDSSLGTKCSGLDMDSNQDKSVMDKGFKIYSSAEGNMINCKLPSTQNGDVSEKSHPGVLWDVFRRQDVPVLTKYLKIHWKELVKSDDAGNEFVAWPLYGGAIFLDKHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSNVQLGLDFLSPESLGDAVRLTEEIRCLPNEHESKVQVLEVGKISLYAASSAIKEVQKLVLDQKLGAEIGYGDPNLTAMVSENYEKMIKRRQITCA* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00379 938 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 194 259 IPR018866 -
Lapu7g00379 938 ProSiteProfiles Zinc finger RING-type profile. 199 246 IPR001841 -
Lapu7g00379 938 ProSiteProfiles WRC domain profile. 16 60 IPR014977 -
Lapu7g00379 938 MobiDBLite consensus disorder prediction 158 199 - -
Lapu7g00379 938 MobiDBLite consensus disorder prediction 1 20 - -
Lapu7g00379 938 Pfam JmjC domain, hydroxylase 801 847 IPR003347 -
Lapu7g00379 938 MobiDBLite consensus disorder prediction 177 198 - -
Lapu7g00379 938 Pfam WRC 17 57 IPR014977 -
Lapu7g00379 938 Coils Coil 56 76 - -
Lapu7g00379 938 ProSiteProfiles JmjC domain profile. 572 868 IPR003347 -
Lapu7g00379 938 Gene3D Cupin 460 877 - -
Lapu7g00379 938 SMART cupin_9 579 868 IPR003347 -
Lapu7g00379 938 SUPERFAMILY Clavaminate synthase-like 477 873 - -
Lapu7g00379 938 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 18 903 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00379 Lapu-Chr7 4552775 4560324 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00379 17 57 GRF Transcription Factor Family AT3G13960 46.341 2.48e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lapu7g00379 JmjC 1.3e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00379 K15601 - gmx:100792166 1645.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00379 7 4552775 4560324 Lapu7g00379 7 4552775 4560324 ECH